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NC_004735.1__NP_835644.1__Rm378p057__00057

Bact-Vir

NC_004735.1__NP_835644.1__Rm378p057__00057

Identity

Accession:
NC_004735 ↗
Kingdom:
phage

Quality

64.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodothermus_phage_RM378

TaxID: 148943

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-175
PDB
Domain cluster: rep: IMGVR_UViG_3300029775_000002-3300029775-Ga0134843_100044344__D1-100
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vcnA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.68 51.0 4.72e-01 78.6% 97.2%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 36.0 4.12e-01 99.1% 69.0%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 45.0 3.58e-01 71.4% 61.4%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 38.0 3.75e-01 99.1% 55.8%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 36.0 3.91e-01 99.1% 72.8%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.58 49.0 4.01e-01 92.9% 84.2%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 41.0 3.60e-01 74.1% 61.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 32.0 3.76e-01 77.7% 82.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 34.0 4.05e-01 90.2% 93.3%
3sf6A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 37.0 3.56e-01 70.5% 69.8%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 34.0 3.29e-01 89.3% 57.7%
8h72B01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 44.0 3.33e-01 98.2% 85.9%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.51 42.0 3.89e-01 90.2% 98.6%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.50 36.0 3.52e-01 75.0% 85.6%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 35.0 3.40e-01 95.5% 63.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003639 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.88 81.0 7.14e-01 100.0% 69.7%
5002559 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.86 81.0 6.94e-01 100.0% 67.3%
5045223 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 59.0 6.57e-01 71.4% 100.0%
4961846 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.83 79.0 6.64e-01 100.0% 66.3%
5009771 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.82 78.0 6.60e-01 100.0% 68.2%
5005257 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.81 78.0 6.58e-01 100.0% 67.1%
4933787 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.81 77.0 6.54e-01 100.0% 68.8%
4990693 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.81 77.0 6.45e-01 100.0% 69.1%
4934193 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.81 74.0 6.42e-01 100.0% 67.5%
5014572 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.80 73.0 6.37e-01 99.1% 73.9%
4955688 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.78 73.0 6.29e-01 100.0% 68.5%
5025666 7000.1.1.4 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › PF27234 0.76 71.0 6.26e-01 100.0% 74.2%
5051051 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.75 69.0 5.96e-01 99.1% 75.3%
4940179 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.75 69.0 6.04e-01 99.1% 73.1%
4212948 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.65 37.0 3.75e-01 91.1% 55.7%
5077621 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.62 53.0 4.05e-01 95.5% 71.1%
5054956 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.61 43.0 4.27e-01 73.2% 89.2%
5007367 3567.1.1.196 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF27424 0.61 29.0 3.49e-01 90.2% 66.7%
4552385 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.60 42.0 3.79e-01 73.2% 52.3%
4284000 3567.1.1.170 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF27758 0.59 37.0 3.02e-01 94.6% 34.6%
3625125 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 41.0 3.11e-01 72.3% 72.5%
None — 0.57 40.0 3.04e-01 72.3% 73.3%
3228202 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 41.0 3.77e-01 81.2% 68.0%