←Back to structures

NC_004735.1__NP_835709.1__Rm378p122__00122

Bact-Vir

NC_004735.1__NP_835709.1__Rm378p122__00122

Identity

Accession:
NC_004735 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodothermus_phage_RM378

TaxID: 148943

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-123
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 37.0 4.55e-01 88.4% 89.3%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 40.0 4.10e-01 90.1% 63.8%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 32.0 3.37e-01 73.6% 53.3%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 45.0 4.09e-01 76.0% 91.0%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 49.0 5.13e-01 100.0% 92.9%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.61 38.0 3.58e-01 88.4% 51.0%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 44.0 4.64e-01 88.4% 83.6%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 38.0 3.94e-01 88.4% 68.2%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 47.0 4.01e-01 100.0% 50.5%
3m71A00 1.50.10.150 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Voltage-dependent anion channel 0.58 51.0 3.81e-01 98.3% 38.3%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 44.0 3.85e-01 99.2% 55.2%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 31.0 3.32e-01 73.6% 58.3%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 41.0 4.02e-01 89.3% 71.1%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.99e-01 88.4% 73.8%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.53 38.0 3.52e-01 74.4% 84.3%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 47.0 3.33e-01 100.0% 41.7%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.51 40.0 3.99e-01 99.2% 78.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237761 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 45.0 4.90e-01 88.4% 86.0%
3394684 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.64 45.0 4.40e-01 88.4% 65.2%
3790837 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 44.0 4.29e-01 88.4% 66.7%
5007317 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.61 54.0 4.12e-01 97.5% 90.7%
5056992 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 40.0 3.82e-01 100.0% 56.6%
3232098 174.1.1.13 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.59 40.0 3.90e-01 88.4% 63.1%
3176286 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 4.16e-01 100.0% 52.1%
3960319 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.59 46.0 4.10e-01 88.4% 58.8%
3660 633.10.1.1 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.59 37.0 3.81e-01 88.4% 66.4%
3576407 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.58 46.0 4.71e-01 87.6% 87.8%
5052878 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 43.0 4.73e-01 93.4% 100.0%
3936121 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 4.21e-01 89.3% 87.0%
3195933 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 50.0 4.17e-01 100.0% 57.2%
3197870 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 4.29e-01 89.3% 77.8%
3492279 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.54 37.0 3.87e-01 71.1% 79.1%
5056869 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 34.0 3.02e-01 72.7% 44.0%
3616669 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 42.0 4.38e-01 88.4% 88.7%
3369676 603.2.1.13 ↗ alpha bundles › STAT-like › STAT › STAT › NET2A_C 0.53 44.0 3.84e-01 88.4% 80.6%
5032512 5086.1.1.234 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CdvA 0.52 44.0 4.22e-01 89.3% 99.3%
3696407 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.52 43.0 3.43e-01 88.4% 52.8%
3516162 603.1.1.23 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Sec20 0.51 45.0 4.02e-01 95.0% 84.7%
3491050 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.51 35.0 2.59e-01 99.2% 27.0%
3618769 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 4.27e-01 95.0% 98.6%
3591581 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 46.0 3.17e-01 100.0% 60.2%
3585714 109.4.1.220 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SMG1 0.51 44.0 2.57e-01 99.2% 25.5%
3638080 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 41.0 3.89e-01 88.4% 77.3%
3371371 4229.1.1.4 ↗ alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Hs1pro-1_C 0.50 44.0 3.54e-01 100.0% 66.4%
5024278 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.50 41.0 3.61e-01 88.4% 84.4%
D2 high residues 146-224
PDB
Domain cluster: rep: NC_004735.1__NP_835708.1__Rm378p121__00121__D13-67