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NC_004746.1__NP_839937.1__P335p46__00046

Bact-Vir

NC_004746.1__NP_839937.1__P335p46__00046

Identity

Accession:
NC_004746 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-70
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 63.0 4.88e-01 98.4% 43.2%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 63.0 4.90e-01 98.4% 43.4%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 61.0 4.64e-01 98.4% 39.4%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 59.0 4.52e-01 100.0% 40.5%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 60.0 4.39e-01 98.4% 35.6%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 44.0 3.90e-01 89.1% 43.3%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 55.0 3.80e-01 98.4% 25.7%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 59.0 4.48e-01 100.0% 40.7%
1y9wA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 57.0 4.95e-01 98.4% 59.6%
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 58.0 3.76e-01 98.4% 20.0%
7b3aA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 56.0 4.36e-01 98.4% 41.6%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 54.0 4.23e-01 95.3% 41.8%
2r7hB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 54.0 4.20e-01 98.4% 40.9%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 55.0 4.30e-01 98.4% 46.2%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 56.0 4.17e-01 98.4% 39.6%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.62 52.0 4.69e-01 100.0% 98.9%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 50.0 4.19e-01 95.3% 100.0%
2gshA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 52.0 3.90e-01 100.0% 88.3%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.59 50.0 3.64e-01 93.8% 61.3%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 50.0 4.23e-01 100.0% 72.5%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 47.0 4.02e-01 93.8% 100.0%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.56 47.0 3.22e-01 93.8% 49.6%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 45.0 3.85e-01 93.8% 69.9%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 44.0 3.87e-01 89.1% 84.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 44.0 4.05e-01 93.8% 93.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 47.0 3.46e-01 100.0% 90.4%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 45.0 3.43e-01 100.0% 93.5%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 48.0 3.74e-01 100.0% 77.5%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 45.0 3.85e-01 95.3% 100.0%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 47.0 3.90e-01 100.0% 83.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 43.0 3.90e-01 90.6% 86.8%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.47e-01 82.8% 85.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.53e-01 92.2% 86.6%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 3.78e-01 100.0% 77.6%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.54e-01 92.2% 87.9%
6lkzC01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 47.0 2.93e-01 100.0% 85.0%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 3.24e-01 100.0% 98.6%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 39.0 4.24e-01 90.6% 100.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.21e-01 85.9% 56.8%
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.25e-01 95.3% 90.9%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.80e-01 95.3% 51.9%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.04e-01 100.0% 36.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134528 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.73 63.0 4.86e-01 98.4% 43.0%
3941464 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.73 63.0 4.75e-01 98.4% 39.4%
4951898 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.72 63.0 4.72e-01 98.4% 40.0%
169324 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 61.0 4.65e-01 98.4% 39.9%
3279428 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 60.0 4.60e-01 96.9% 40.9%
3284632 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.71 63.0 5.16e-01 98.4% 55.3%
4996349 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 59.0 4.56e-01 100.0% 40.5%
3587578 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.69 59.0 4.59e-01 96.9% 43.1%
5006836 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.69 59.0 4.47e-01 98.4% 78.8%
4401040 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.68 56.0 5.12e-01 96.9% 67.8%
3625250 213.1.1.81 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF7596 0.68 57.0 4.43e-01 96.9% 72.0%
4470389 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.68 57.0 4.24e-01 96.9% 35.9%
1176053 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.67 58.0 4.52e-01 98.4% 43.2%
3278511 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 52.0 4.83e-01 93.8% 66.3%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 58.0 4.90e-01 100.0% 86.2%
4363283 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.66 58.0 4.60e-01 100.0% 47.4%
3622516 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.59e-01 93.8% 87.2%
4000395 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.65 50.0 3.54e-01 89.1% 25.7%
3542914 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 39.0 3.20e-01 100.0% 31.7%
5075159 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.64 53.0 3.99e-01 93.8% 61.2%
3708580 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.64 55.0 3.30e-01 98.4% 27.3%
3508461 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 54.0 3.91e-01 98.4% 92.1%
5053021 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.62 47.0 4.15e-01 79.7% 84.4%
3933051 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.61 41.0 2.68e-01 70.3% 25.9%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 52.0 4.17e-01 100.0% 96.9%
4609775 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 49.0 4.31e-01 92.2% 100.0%
3834272 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.59 52.0 3.37e-01 100.0% 27.5%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 35.0 2.69e-01 71.9% 26.0%
3477607 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 52.0 2.91e-01 100.0% 10.5%
1174496 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 48.0 4.03e-01 96.9% 92.3%
4965849 3435.1.1.9 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.57 44.0 2.99e-01 87.5% 23.9%
4278807 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 48.0 4.12e-01 100.0% 93.6%
3769980 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.56 47.0 4.30e-01 100.0% 76.7%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 46.0 3.46e-01 100.0% 92.1%
3199598 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.56 50.0 3.29e-01 100.0% 53.0%
3598219 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.53e-01 85.9% 95.2%
3508714 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.55 44.0 3.30e-01 87.5% 53.8%
4977365 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.55 45.0 3.59e-01 90.6% 86.2%
4991332 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 41.0 2.85e-01 79.7% 23.7%
3511356 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.54 45.0 3.76e-01 92.2% 54.3%
4489443 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 46.0 3.95e-01 100.0% 98.2%
4240860 3421.1.1.1 a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD 0.54 43.0 3.56e-01 92.2% 53.9%
5068175 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 46.0 3.75e-01 100.0% 50.0%
5039446 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 44.0 3.58e-01 98.4% 45.7%
3497349 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.54 42.0 2.87e-01 82.8% 59.6%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.53 47.0 2.67e-01 100.0% 11.9%
3724523 4121.1.1.7 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.53 45.0 2.87e-01 96.9% 50.3%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 42.0 3.49e-01 87.5% 92.2%
3681185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 45.0 3.12e-01 100.0% 80.4%
4081828 3421.1.1.1 a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD 0.53 44.0 3.54e-01 96.9% 52.6%
3595983 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.52 44.0 4.11e-01 100.0% 90.4%
4985980 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.52 40.0 2.88e-01 90.6% 79.8%
3681334 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 43.0 2.76e-01 92.2% 59.3%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 45.0 4.09e-01 98.4% 100.0%
3495949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.41e-01 92.2% 55.6%
4975431 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 45.0 4.02e-01 98.4% 95.6%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 40.0 3.84e-01 93.8% 82.5%
4928052 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 45.0 2.84e-01 100.0% 19.4%