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NC_004820.1__NP_852516.1__BC1882__00036

Bact-Vir

NC_004820.1__NP_852516.1__BC1882__00036

Identity

Accession:
NC_004820 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_phBC6A51

TaxID: 225725

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: rep: EU874396.1__ACH42302.1__X__00045__D2-64
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.23e-01 100.0% 68.2%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.08e-01 98.4% 77.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 57.0 5.00e-01 100.0% 67.7%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 4.98e-01 100.0% 79.5%
1g25A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 38.0 3.81e-01 100.0% 63.1%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 34.0 3.55e-01 100.0% 63.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 39.0 2.93e-01 71.4% 85.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 51.0 4.79e-01 100.0% 84.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 36.0 3.41e-01 100.0% 56.6%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.54 45.0 3.67e-01 100.0% 99.3%
4wkrA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 30.0 2.92e-01 87.3% 47.2%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.53 37.0 3.17e-01 76.2% 87.8%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.52 37.0 3.75e-01 76.2% 93.4%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.52 42.0 2.96e-01 93.7% 97.0%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.01e-01 85.7% 98.7%
4lesA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 2.84e-01 77.8% 95.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047239 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.70e-01 100.0% 78.1%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 58.0 6.13e-01 100.0% 94.5%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.72 64.0 6.03e-01 100.0% 92.0%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.72 63.0 6.13e-01 100.0% 95.7%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.93e-01 100.0% 98.5%
3659589 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 41.0 4.07e-01 100.0% 67.7%
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.60 36.0 3.99e-01 100.0% 76.0%
3227231 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.60 44.0 4.41e-01 77.8% 98.4%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.60 43.0 4.32e-01 100.0% 75.4%
3222628 304.9.1.80 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF27577 0.60 36.0 2.69e-01 88.9% 23.9%
4024679 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.59 40.0 4.10e-01 77.8% 75.0%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.57 49.0 4.04e-01 100.0% 51.6%
4941559 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.21e-01 98.4% 100.0%
4372552 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.53 38.0 2.42e-01 79.4% 76.3%
4540341 2003.1.1.48 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.53 44.0 3.10e-01 100.0% 99.6%
3163601 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 39.0 2.99e-01 88.9% 80.6%
None — 0.51 37.0 2.25e-01 84.1% 17.7%
3465043 6108.1.1.0 ↗ alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.51 37.0 2.23e-01 84.1% 16.8%
3243117 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 43.0 3.80e-01 100.0% 71.0%
5025112 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 40.0 3.31e-01 92.1% 51.2%
4977899 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.39e-01 88.9% 95.5%
3947421 148.1.3.8 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.50 36.0 3.17e-01 77.8% 84.0%