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NC_004827.1__NP_852749.1__Aaphi23p25__00034
Bact-VirNC_004827.1__NP_852749.1__Aaphi23p25__00034
Identity
- Accession:
- NC_004827 ↗
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-92
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23793.2 best | LysC | 48.1 | 1.30e-12 | 100.0% | 72.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.82 | 71.0 | 6.10e-01 | 100.0% | 72.0% |
| 4i5sA01 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.77 | 57.0 | 5.31e-01 | 80.4% | 72.3% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 66.0 | 5.94e-01 | 100.0% | 74.6% |
| 4nimA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.75 | 61.0 | 3.96e-01 | 94.1% | 54.2% |
| 1tbaA00 | 1.10.1100.10 | Mainly Alpha › Orthogonal Bundle › Transcription Initiation Factor IId 230k; Chain A › TAFII-230 TBP-binding domain | 0.54 | 38.0 | 3.54e-01 | 76.5% | 73.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931937 | 3755.4.1.66 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › MCPsignal | 0.80 | 68.0 | 4.12e-01 | 96.1% | 14.6% |
| 3213500 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.79 | 62.0 | 5.52e-01 | 88.2% | 65.3% |
| 4936947 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.76 | 59.0 | 4.43e-01 | 100.0% | 33.8% |
| 3705583 | 3928.1.1.0 ↗ | alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA | 0.73 | 63.0 | 5.71e-01 | 100.0% | 88.6% |