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NC_004831.2__NP_853604.1__SP6p44__00044

Bact-Vir

NC_004831.2__NP_853604.1__SP6p44__00044

Identity

Accession:
NC_004831 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Zindervirus› Salmonella_phage_SP6

TaxID: 2907955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-77
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.68 56.0 4.92e-01 100.0% 69.4%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 57.0 4.91e-01 100.0% 72.6%
4l69A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 55.0 4.93e-01 100.0% 73.5%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 51.0 3.76e-01 100.0% 31.0%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 48.0 4.16e-01 100.0% 50.6%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.64 54.0 4.83e-01 100.0% 71.9%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 52.0 4.12e-01 100.0% 44.4%
2e28A03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.62 52.0 3.80e-01 100.0% 72.6%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 47.0 3.68e-01 100.0% 36.5%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.62 51.0 4.62e-01 100.0% 67.7%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 43.0 3.30e-01 100.0% 28.6%
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.59 44.0 4.27e-01 100.0% 74.0%
3hisA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 41.0 3.52e-01 95.5% 46.9%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 46.0 3.52e-01 100.0% 45.7%
1tpzA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 2.60e-01 95.5% 18.2%
1xubA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.20e-01 100.0% 37.8%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 41.0 3.22e-01 100.0% 71.3%
2z0rA00 3.40.1350.90 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 0.50 42.0 3.34e-01 100.0% 64.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4358637 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.69 59.0 5.14e-01 100.0% 72.9%
21932 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.68 57.0 5.12e-01 100.0% 76.9%
4024774 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 54.0 4.64e-01 100.0% 72.0%
3414351 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 44.0 3.03e-01 100.0% 21.7%
4930662 7518.1.1.6 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_A 0.58 48.0 3.70e-01 100.0% 79.1%
4073701 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.57 48.0 4.25e-01 100.0% 76.5%
4029261 321.1.1.4 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.56 45.0 2.82e-01 100.0% 64.2%
4992446 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.55 43.0 3.36e-01 100.0% 75.8%
3348449 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 46.0 3.49e-01 100.0% 80.9%
4304580 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 2.81e-01 100.0% 23.7%
None — 0.54 39.0 3.11e-01 100.0% 33.3%
3965428 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 45.0 3.48e-01 100.0% 50.5%
3250314 2007.2.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.53 41.0 3.08e-01 100.0% 34.0%
3967976 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.52 38.0 2.70e-01 84.1% 44.4%
4328178 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 42.0 3.91e-01 100.0% 76.7%
3174811 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.51 39.0 3.11e-01 100.0% 41.5%
1657339 4019.1.1.3 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.51 36.0 2.96e-01 90.9% 35.1%
3987537 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.50 42.0 3.55e-01 100.0% 81.2%
3602892 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.50 42.0 3.78e-01 100.0% 78.5%