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NC_005066.1__NP_891763.1__RB49p192__00195

Bact-Vir

NC_005066.1__NP_891763.1__RB49p192__00195

Identity

Accession:
NC_005066 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Krischvirus› Escherichia_phage_RB49

TaxID: 50948

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-157
PDB
Domain cluster: rep: MW057855.1__QPB11976.1__X__00013__D32-148
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.75 51.0 5.79e-01 100.0% 90.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.73 58.0 6.05e-01 100.0% 90.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.70 49.0 5.20e-01 100.0% 83.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 46.0 4.79e-01 100.0% 76.9%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 60.0 5.71e-01 100.0% 90.5%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.64 59.0 5.21e-01 100.0% 97.0%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 57.0 5.33e-01 100.0% 89.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 56.0 5.27e-01 100.0% 92.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 55.0 5.06e-01 100.0% 89.3%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 46.0 4.86e-01 100.0% 89.6%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 55.0 5.41e-01 100.0% 95.3%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 56.0 5.20e-01 100.0% 93.7%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 55.0 5.27e-01 100.0% 92.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.60 31.0 3.95e-01 93.2% 86.6%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 54.0 5.16e-01 100.0% 93.3%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 54.0 5.32e-01 100.0% 96.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 53.0 5.11e-01 100.0% 94.0%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 4.35e-01 100.0% 74.2%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.58 53.0 4.71e-01 100.0% 98.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 51.0 4.56e-01 100.0% 71.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 36.0 3.43e-01 96.6% 53.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 51.0 5.02e-01 100.0% 95.3%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 50.0 4.46e-01 97.4% 78.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.53 40.0 3.20e-01 82.1% 99.2%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.51 45.0 3.41e-01 99.1% 97.7%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.17e-01 78.6% 90.1%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.66e-01 90.6% 65.5%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.50 45.0 3.35e-01 99.1% 97.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4380184 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.83 58.0 6.65e-01 100.0% 94.4%
4927832 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 51.0 5.30e-01 100.0% 83.6%
3452325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 37.0 3.06e-01 100.0% 31.5%
852 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.65 60.0 5.71e-01 100.0% 90.5%
3947219 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.64 59.0 5.17e-01 100.0% 95.9%
3716204 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.63 44.0 4.53e-01 100.0% 73.9%
5043414 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.63 47.0 4.51e-01 100.0% 67.4%
3781450 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.63 47.0 4.57e-01 100.0% 70.8%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 41.0 4.19e-01 100.0% 68.7%
3585032 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.61 54.0 5.26e-01 100.0% 86.9%
4033291 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.60 56.0 4.88e-01 100.0% 98.2%
3511505 9.23.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 0.60 53.0 5.34e-01 96.6% 95.0%
4668044 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 55.0 5.26e-01 100.0% 95.5%
872 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.60 56.0 5.20e-01 100.0% 93.7%
3624142 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 55.0 5.16e-01 100.0% 92.1%
4875038 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.59 51.0 4.70e-01 100.0% 72.7%
2320506 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 53.0 4.96e-01 100.0% 92.4%
3769483 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 53.0 5.25e-01 100.0% 93.6%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 53.0 5.08e-01 100.0% 94.7%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.58 41.0 4.35e-01 100.0% 81.9%
3466470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 4.24e-01 100.0% 70.0%
3236394 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 37.0 3.96e-01 100.0% 73.1%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 34.0 3.82e-01 90.6% 75.6%
3931011 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 52.0 5.04e-01 100.0% 90.0%
3227515 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 53.0 5.11e-01 100.0% 93.8%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.57 52.0 5.08e-01 100.0% 93.8%
3607579 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 43.0 4.43e-01 96.6% 81.6%
5078865 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 50.0 4.80e-01 100.0% 97.0%
3556710 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.55 50.0 4.89e-01 100.0% 97.7%
5020831 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.55 39.0 3.81e-01 96.6% 66.4%
5022840 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 34.0 4.04e-01 94.0% 88.2%
3861601 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.54 48.0 4.37e-01 100.0% 79.1%
4034609 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.54 37.0 3.85e-01 100.0% 74.5%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.49e-01 100.0% 56.0%
3411079 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.52 46.0 4.04e-01 100.0% 80.6%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 41.0 4.02e-01 100.0% 77.6%
3575735 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 4.23e-01 88.0% 90.8%
3648910 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 30.0 3.45e-01 95.7% 76.7%
3912662 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.51 38.0 2.71e-01 79.5% 88.4%
3796176 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.51 42.0 3.93e-01 100.0% 70.7%
4019054 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 41.0 3.74e-01 88.9% 77.6%
5026071 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 30.0 3.67e-01 87.2% 93.3%
3217385 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 32.0 3.69e-01 98.3% 88.2%