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NC_005069.1__NP_892098.1__PY54p52__00053

Bact-Vir

NC_005069.1__NP_892098.1__PY54p52__00053

Identity

Accession:
NC_005069 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-93
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 42.0 3.39e-01 87.0% 68.7%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.09e-01 71.7% 91.7%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.51 35.0 3.65e-01 71.7% 87.4%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 35.0 3.50e-01 71.7% 90.6%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 35.0 3.47e-01 71.7% 84.4%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 36.0 3.18e-01 75.0% 73.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024828 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.54 42.0 2.71e-01 88.0% 41.7%
5047389 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.46e-01 79.3% 56.2%
3479394 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.13e-01 71.7% 84.4%