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NC_005083.2__NP_899519.1__KVP40.0273__00271

Bact-Vir

NC_005083.2__NP_899519.1__KVP40.0273__00271

Identity

Accession:
NC_005083 ↗
Kingdom:
phage

Quality

62.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-65
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.74 52.0 3.45e-01 75.0% 47.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 44.0 4.08e-01 88.5% 47.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 45.0 3.42e-01 92.3% 29.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 47.0 3.77e-01 88.5% 37.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.05e-01 88.5% 54.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 46.0 3.87e-01 80.8% 42.4%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.65 39.0 3.03e-01 82.7% 26.5%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.65 47.0 3.26e-01 78.8% 62.4%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 4.74e-01 100.0% 71.6%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.62 41.0 3.72e-01 98.1% 48.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.58e-01 86.5% 38.8%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 49.0 3.18e-01 94.2% 23.4%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 4.53e-01 100.0% 66.2%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.58e-01 86.5% 37.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.57e-01 86.5% 39.4%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.30e-01 92.3% 29.3%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 48.0 3.93e-01 90.4% 98.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.62e-01 86.5% 41.3%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.28e-01 88.5% 34.8%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 3.92e-01 100.0% 48.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 44.0 4.04e-01 94.2% 63.4%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.57e-01 92.3% 46.2%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 46.0 4.35e-01 88.5% 75.8%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.56 45.0 3.18e-01 94.2% 60.2%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 46.0 3.11e-01 100.0% 64.3%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.56 41.0 3.55e-01 86.5% 49.5%
1sazA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 3.25e-01 100.0% 31.2%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 44.0 2.91e-01 100.0% 35.9%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.32e-01 86.5% 49.6%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 43.0 4.02e-01 88.5% 78.8%
3zs7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 44.0 2.92e-01 100.0% 22.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.36e-01 92.3% 43.0%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 44.0 3.72e-01 92.3% 97.8%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.22e-01 92.3% 38.3%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 41.0 2.62e-01 100.0% 19.7%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.53 40.0 2.77e-01 86.5% 38.8%
1c4zA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.53 39.0 3.49e-01 82.7% 84.0%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.53 42.0 2.98e-01 94.2% 53.2%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 38.0 2.64e-01 84.6% 92.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.46e-01 86.5% 58.0%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 43.0 3.61e-01 94.2% 96.8%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.52 39.0 3.31e-01 86.5% 80.2%
3tswB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 42.0 3.60e-01 96.2% 62.8%
3wisA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.51 40.0 2.86e-01 90.4% 95.6%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 40.0 3.02e-01 98.1% 43.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933001 3933.1.1.0 a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 0.79 63.0 5.65e-01 90.4% 68.0%
3447770 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 48.0 5.56e-01 94.2% 94.3%
1412633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 46.0 4.42e-01 84.6% 58.6%
4019657 220.1.1.210 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7611 0.71 49.0 3.50e-01 75.0% 24.5%
3514878 2.1.1.43 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.70 57.0 4.35e-01 100.0% 39.2%
4231677 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 56.0 4.05e-01 88.5% 62.8%
5083877 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 50.0 3.74e-01 80.8% 46.7%
4997881 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.68 52.0 3.44e-01 82.7% 54.5%
3973734 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.67 51.0 3.04e-01 82.7% 60.8%
4120466 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 53.0 3.93e-01 88.5% 52.6%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 53.0 4.21e-01 88.5% 55.2%
4112553 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 53.0 3.85e-01 88.5% 57.9%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 52.0 3.87e-01 88.5% 55.6%
4082783 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 53.0 3.75e-01 88.5% 56.2%
4153666 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 52.0 3.88e-01 88.5% 53.3%
4928207 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 49.0 4.36e-01 82.7% 64.0%
4951189 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.64 45.0 4.62e-01 75.0% 88.0%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 51.0 3.84e-01 88.5% 51.9%
4032881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 51.0 3.82e-01 88.5% 53.3%
3958910 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.64 51.0 3.77e-01 88.5% 53.6%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.64 47.0 3.63e-01 86.5% 34.2%
4042318 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 51.0 3.79e-01 88.5% 54.8%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.64 50.0 3.89e-01 86.5% 65.0%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 55.0 3.76e-01 100.0% 60.5%
3756160 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.64 47.0 3.47e-01 86.5% 29.0%
4053930 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 51.0 3.69e-01 88.5% 52.0%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 51.0 3.80e-01 88.5% 51.9%
3785230 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 46.0 4.24e-01 92.3% 61.5%
4949702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 50.0 3.84e-01 86.5% 51.7%
3618062 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.63 51.0 3.01e-01 94.2% 68.9%
3262550 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.63 44.0 3.40e-01 86.5% 32.5%
4044870 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 51.0 3.82e-01 92.3% 62.2%
3223228 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 42.0 2.57e-01 94.2% 10.8%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 49.0 3.64e-01 88.5% 53.6%
5041234 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.61 48.0 4.68e-01 100.0% 80.0%
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 48.0 3.70e-01 88.5% 56.0%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 49.0 3.72e-01 92.3% 63.0%
4462906 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.61 42.0 3.54e-01 75.0% 80.0%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 47.0 3.45e-01 88.5% 71.3%
4223097 101.1.2.289 alpha arrays › HTH › HTH › winged helix domain › Stb3 0.60 43.0 3.55e-01 88.5% 40.0%
3244890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.41e-01 86.5% 34.2%
3574512 2003.1.3.27 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase 0.60 48.0 2.85e-01 94.2% 70.1%
2319285 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 47.0 3.69e-01 88.5% 54.8%
5027344 1170.1.1.0 beta barrels › IL8-related › IL8-related › IL8 0.59 40.0 3.96e-01 90.4% 65.5%
3926600 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.46e-01 92.3% 37.3%
3989311 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 43.0 3.31e-01 80.8% 50.8%
4961179 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.59 42.0 4.32e-01 75.0% 88.0%
5074894 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.59 40.0 2.59e-01 73.1% 16.1%
3312580 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.59 48.0 3.05e-01 94.2% 82.1%
3275677 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.59 42.0 3.05e-01 86.5% 25.6%
3924744 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 40.0 3.01e-01 78.8% 27.9%
4854876 1075.4.1.30 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran 0.57 35.0 2.50e-01 84.6% 18.9%
3407609 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.57 40.0 3.29e-01 96.2% 41.1%
3271442 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 3.19e-01 86.5% 39.3%
3667001 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 2.86e-01 100.0% 16.2%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.56 44.0 2.58e-01 98.1% 13.4%
3270411 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.38e-01 92.3% 39.1%
4968041 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.55 45.0 3.36e-01 96.2% 94.5%
4978893 3755.3.1.632 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.52 37.0 2.86e-01 80.8% 35.7%
5026722 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 34.0 2.60e-01 76.9% 26.7%
3469045 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 41.0 3.78e-01 100.0% 97.3%