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NC_005091.2__NP_918975.1__Nazgul42__00042

Bact-Vir

NC_005091.2__NP_918975.1__Nazgul42__00042

Identity

Accession:
NC_005091 ↗
Kingdom:
phage

Quality

57.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Nazgulvirus› Burkholderia_phage_BcepNazgul

TaxID: 242861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 379-522
PDB
Domain cluster: rep: JQ067093.2__ALH23509.1__PaMx74_36__00036__D1104-1231
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00754.32 best F5_F8_type_C 32.5 1.20e-07 74.3% 78.0%
PF22633.4 F5_F8_type_C_2 33.4 7.80e-08 62.5% 88.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w8oA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.84 63.0 6.28e-01 76.4% 78.6%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.77 59.0 5.96e-01 78.5% 80.3%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.74 56.0 5.75e-01 79.2% 82.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.70 55.0 5.93e-01 95.8% 97.5%
1bu8A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.68 48.0 5.47e-01 95.8% 100.0%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 51.0 4.79e-01 81.2% 96.6%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.65 49.0 5.33e-01 97.9% 94.2%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.62 48.0 4.56e-01 81.2% 99.4%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 46.0 4.54e-01 78.5% 78.2%
2j43A01 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 40.0 4.57e-01 86.1% 98.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.58 33.0 3.98e-01 85.4% 85.1%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.58 42.0 4.29e-01 90.3% 76.6%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.58 38.0 3.92e-01 79.9% 67.9%
3uroR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.99e-01 96.5% 84.0%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.73e-01 96.5% 78.9%
4bhuA00 2.60.40.3490 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 4.36e-01 98.6% 85.2%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 35.0 3.99e-01 97.9% 85.3%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 4.05e-01 97.9% 76.3%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.74e-01 72.9% 81.6%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 3.45e-01 79.2% 85.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 4.21e-01 98.6% 100.0%
2lr4A00 2.60.40.2870 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 33.0 3.53e-01 98.6% 68.8%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.53 32.0 3.84e-01 93.8% 94.4%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 4.26e-01 89.6% 100.0%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.34e-01 98.6% 50.2%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.58e-01 84.0% 73.2%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 2.97e-01 97.9% 38.1%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 3.54e-01 97.2% 65.7%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.32e-01 86.1% 64.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2324084 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.88 69.0 6.58e-01 81.2% 75.2%
3748870 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.84 79.0 7.59e-01 98.6% 98.1%
3568440 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.83 79.0 7.58e-01 99.3% 98.8%
3832908 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.83 66.0 6.22e-01 82.6% 74.7%
3699596 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.82 75.0 6.80e-01 96.5% 99.5%
3594435 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.82 75.0 6.50e-01 96.5% 97.1%
3904915 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.82 78.0 7.29e-01 100.0% 94.7%
3715994 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.81 77.0 6.79e-01 100.0% 94.5%
3934332 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.81 76.0 7.23e-01 99.3% 90.9%
3235471 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.80 74.0 7.37e-01 98.6% 98.7%
3485554 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.80 75.0 6.78e-01 100.0% 84.7%
3219798 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.78 74.0 7.12e-01 100.0% 91.9%
3934331 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.78 74.0 7.09e-01 100.0% 93.8%
3594434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.77 73.0 6.56e-01 100.0% 91.6%
3575575 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.77 72.0 6.74e-01 100.0% 92.6%
3748879 10.32.1.105 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4457 0.76 71.0 6.99e-01 99.3% 99.3%
3568441 11.1.5.81 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4457 0.76 70.0 6.99e-01 97.9% 100.0%
3877381 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.76 70.0 6.96e-01 99.3% 99.3%
4941983 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 45.0 4.55e-01 77.8% 71.4%
3366763 10.10.1.4 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › ATS3 0.62 54.0 5.57e-01 100.0% 100.0%
3586253 11.1.1.34 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reeler 0.61 40.0 4.64e-01 89.6% 97.9%
3451480 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.61 54.0 5.39e-01 95.1% 100.0%
3881301 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.60 35.0 4.21e-01 99.3% 90.0%
4212121 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 48.0 5.10e-01 99.3% 100.0%
5029850 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 42.0 4.75e-01 90.3% 99.1%
5064594 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 40.0 3.98e-01 73.6% 92.3%
3480365 11.1.1.906 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26015 0.56 36.0 3.97e-01 88.9% 82.7%
5067704 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 41.0 3.82e-01 77.1% 65.6%
3592284 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.54 47.0 4.45e-01 97.9% 87.2%
3598458 11.1.1.944 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7498 0.53 32.0 3.67e-01 81.2% 86.3%
5012983 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 34.0 3.77e-01 70.1% 84.4%
3239509 11.2.1.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_SYDE 0.53 36.0 3.89e-01 87.5% 84.2%
None — 0.51 37.0 3.45e-01 98.6% 58.9%
3249212 12.2.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.51 34.0 3.79e-01 88.2% 85.2%
None — 0.51 37.0 3.50e-01 97.2% 61.9%
D2 high residues 969-1174
PDB
Domain cluster: rep: MT028491.1__QIG65831.1__phiOC_p166__00165__D309-505
D3 high residues 1180-1267
PDB
D4 medium residues 5-115
PDB
Domain cluster: rep: ON189047.1__URA07152.1__Mallos_BL60044__00044__D4-113
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10983.14 best DUF2793 84.4 5.80e-24 79.3% 98.9%