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NC_005260.1__NP_943945.1__Aeh1p067__00067

Bact-Vir

NC_005260.1__NP_943945.1__Aeh1p067__00067

Identity

Accession:
NC_005260 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Cinqassovirus› Aeromonas_phage_Aeh1

TaxID: 2880362

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-116
PDB
Domain cluster: rep: NC_020158__YP_007378970.1__HVTV1-65__00064__D54-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 34.3 2.60e-08 89.3% 70.1%
D2 medium residues 126-197
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 46.0 4.74e-01 73.6% 85.5%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 46.0 4.68e-01 75.0% 87.0%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 4.63e-01 77.8% 95.8%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 42.0 4.51e-01 73.6% 94.9%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.60 43.0 3.35e-01 77.8% 71.3%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 43.0 4.21e-01 83.3% 91.3%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 40.0 3.28e-01 77.8% 52.4%
4akfA01 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.56 40.0 2.69e-01 79.2% 69.5%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 35.0 4.03e-01 72.2% 100.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.56 37.0 4.07e-01 70.8% 94.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.11e-01 73.6% 43.0%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 35.0 3.03e-01 72.2% 95.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4401347 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.75 52.0 5.82e-01 72.2% 96.4%
5031010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 47.0 4.76e-01 73.6% 77.1%
4056276 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 48.0 4.27e-01 77.8% 62.9%
3809803 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 47.0 4.86e-01 76.4% 96.9%
3460381 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 45.0 4.68e-01 73.6% 95.4%
None — 0.63 44.0 4.48e-01 75.0% 97.1%
3932949 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 45.0 4.40e-01 77.8% 86.3%
3254552 376.1.1.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_5 0.62 44.0 4.49e-01 75.0% 92.9%
3333001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 42.0 4.50e-01 72.2% 100.0%
3874218 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 43.0 4.40e-01 75.0% 88.6%
3246456 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 46.0 4.66e-01 81.9% 100.0%
3532210 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 41.0 3.81e-01 72.2% 62.1%
None — 0.60 42.0 4.40e-01 75.0% 92.3%
4025085 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 43.0 4.39e-01 77.8% 84.3%
4971412 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.60 42.0 3.26e-01 76.4% 75.6%
3752884 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 48.0 4.58e-01 94.4% 87.8%
3902772 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.58 41.0 4.21e-01 77.8% 85.7%
3520111 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 39.0 4.09e-01 75.0% 98.4%
3726987 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.55 41.0 2.91e-01 80.6% 97.4%
5020144 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.35e-01 72.2% 61.0%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.47e-01 70.8% 95.6%
3261587 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.54 39.0 3.89e-01 79.2% 81.3%
4612383 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 44.0 3.46e-01 93.1% 82.5%
4197086 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 34.0 2.26e-01 76.4% 15.1%
4000496 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.52 40.0 2.91e-01 81.9% 54.5%
3307372 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 35.0 2.22e-01 70.8% 25.0%
3349456 109.4.1.2927 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase 0.51 35.0 2.44e-01 72.2% 43.5%
3414240 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.51 35.0 2.89e-01 72.2% 53.3%
3912948 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 35.0 3.12e-01 73.6% 57.3%
3351227 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 34.0 2.24e-01 70.8% 14.9%
3349809 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.50 34.0 2.05e-01 70.8% 17.8%
D3 medium residues 198-293
PDB