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NC_005284.1__NP_945071.1__phi1026bp41__00041

Bact-Vir

NC_005284.1__NP_945071.1__phi1026bp41__00041

Identity

Accession:
NC_005284 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-76
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.77 58.0 5.77e-01 89.9% 77.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 50.0 4.18e-01 91.3% 66.7%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 2.88e-01 89.9% 17.3%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 41.0 3.15e-01 78.3% 29.3%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 49.0 3.09e-01 89.9% 34.3%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 48.0 3.13e-01 89.9% 89.2%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 48.0 3.94e-01 95.7% 49.6%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.14e-01 91.3% 43.9%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 2.96e-01 89.9% 23.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 39.0 2.93e-01 89.9% 29.5%
3fcxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 3.07e-01 89.9% 91.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.95e-01 95.7% 77.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 45.0 3.90e-01 92.8% 71.4%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 46.0 4.32e-01 100.0% 87.2%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 3.89e-01 94.2% 63.2%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 4.18e-01 88.4% 76.8%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 43.0 3.41e-01 85.5% 53.0%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 39.0 3.34e-01 78.3% 43.0%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 45.0 3.86e-01 92.8% 58.0%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.55e-01 79.7% 65.1%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 48.0 3.11e-01 98.6% 93.8%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 3.00e-01 89.9% 88.7%
2gzsA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 38.0 2.64e-01 73.9% 30.1%
2d5lA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.93e-01 89.9% 23.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.66e-01 91.3% 39.2%
5hc2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.80e-01 91.3% 75.4%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 2.93e-01 98.6% 89.9%
2p97A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 40.0 2.96e-01 82.6% 91.0%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.83e-01 94.2% 74.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 4.16e-01 91.3% 84.5%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 45.0 3.75e-01 100.0% 85.0%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 38.0 3.30e-01 78.3% 49.6%
3va7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 40.0 2.81e-01 84.1% 70.1%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.12e-01 78.3% 94.8%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 41.0 2.57e-01 89.9% 40.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 4.13e-01 88.4% 82.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 41.0 3.28e-01 92.8% 70.1%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 39.0 2.83e-01 85.5% 29.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.57e-01 95.7% 79.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.12e-01 88.4% 79.5%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.62e-01 95.7% 65.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.60e-01 97.1% 75.4%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.80e-01 89.9% 79.7%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 42.0 3.38e-01 98.6% 64.3%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.51 39.0 2.91e-01 87.0% 81.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.50 36.0 2.97e-01 79.7% 71.2%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.25e-01 97.1% 72.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045117 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 39.0 4.12e-01 72.5% 66.7%
4262950 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 47.0 3.14e-01 92.8% 18.3%
3607862 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 53.0 4.81e-01 92.8% 74.7%
3520951 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 46.0 4.28e-01 88.4% 60.0%
3827251 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 46.0 2.94e-01 92.8% 15.9%
4779411 243.3.1.6 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin 0.63 38.0 4.38e-01 71.0% 93.2%
3188936 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 50.0 4.38e-01 87.0% 59.0%
5078978 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 48.0 3.25e-01 91.3% 21.5%
3218513 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.62 54.0 4.52e-01 100.0% 64.8%
4226251 375.1.1.252 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.62 43.0 4.54e-01 76.8% 83.3%
3928182 59.1.1.11 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.62 49.0 4.01e-01 88.4% 80.7%
3266046 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.62 40.0 4.22e-01 73.9% 76.7%
2322283 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.91e-01 89.9% 52.0%
3265211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.44e-01 100.0% 74.4%
5044346 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 38.0 3.28e-01 72.5% 40.9%
3274015 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 49.0 3.08e-01 94.2% 22.1%
3182979 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.59 48.0 3.13e-01 89.9% 93.0%
3166064 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.45e-01 92.8% 45.5%
3715477 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.59 50.0 4.11e-01 98.6% 68.1%
3601615 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.17e-01 95.7% 22.6%
3445964 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 47.0 3.21e-01 91.3% 29.8%
3566586 5.1.4.466 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st, Beta-prop_WDR11_2nd 0.58 45.0 2.55e-01 91.3% 6.8%
3859494 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.58 45.0 2.87e-01 91.3% 16.0%
3492710 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.57 41.0 4.25e-01 89.9% 81.5%
1780166 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.57 46.0 3.16e-01 89.9% 66.2%
5038444 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 38.0 3.85e-01 82.6% 68.6%
3697470 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.83e-01 89.9% 39.8%
3411316 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.56 45.0 2.95e-01 91.3% 18.6%
3260045 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 43.0 4.23e-01 89.9% 77.3%
3932499 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.56 44.0 2.80e-01 88.4% 23.1%
3710433 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 43.0 3.75e-01 85.5% 71.8%
3497349 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.56 48.0 3.41e-01 100.0% 82.2%
3433806 5.1.2.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.55 43.0 3.00e-01 88.4% 25.8%
3739095 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.55 44.0 2.92e-01 91.3% 25.3%
5070387 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 39.0 3.90e-01 84.1% 72.0%
4862964 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.55 39.0 2.87e-01 75.4% 42.2%
3178803 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.55 47.0 4.45e-01 100.0% 92.9%
3530891 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 37.0 3.33e-01 98.6% 45.9%
3246448 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 47.0 3.34e-01 100.0% 87.6%
3510980 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.55 45.0 2.99e-01 92.8% 21.7%
2724284 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 39.0 3.15e-01 76.8% 90.6%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.54 37.0 3.75e-01 72.5% 94.3%
3258452 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 47.0 3.94e-01 98.6% 88.3%
3351597 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 41.0 2.70e-01 85.5% 25.6%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 39.0 2.55e-01 78.3% 20.0%
3614126 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.54 43.0 3.13e-01 89.9% 60.3%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.53 36.0 3.53e-01 97.1% 62.5%
3877607 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 38.0 2.87e-01 88.4% 26.8%
3821284 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 41.0 2.65e-01 91.3% 17.4%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.58e-01 95.7% 68.0%
3804776 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 41.0 2.78e-01 91.3% 27.4%
3176281 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.52 45.0 4.39e-01 100.0% 97.3%
3367314 5.1.4.510 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.52 41.0 2.78e-01 89.9% 98.2%
3937984 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 41.0 3.69e-01 89.9% 68.0%
3340789 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 38.0 2.48e-01 81.2% 20.0%
3780194 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 41.0 2.83e-01 88.4% 24.9%
3757490 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.51 36.0 3.34e-01 98.6% 55.8%
4820874 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 3.51e-01 89.9% 71.6%
4602887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 4.16e-01 98.6% 97.3%
3499841 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 39.0 3.69e-01 89.9% 77.8%
3716329 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 39.0 3.08e-01 88.4% 58.8%