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NC_005294.1__NP_945304.1__EJ-1p65__00065
Bact-VirNC_005294.1__NP_945304.1__EJ-1p65__00065
Identity
- Accession:
- NC_005294 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 108-162
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24243.2 best | Phage_tail_C | 43.1 | 3.00e-11 | 47.3% | 100.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9hA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.69 | 39.0 | 2.78e-01 | 72.7% | 19.1% |
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.61 | 43.0 | 3.15e-01 | 78.2% | 26.1% |
| 3dhnA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 42.0 | 2.86e-01 | 81.8% | 57.4% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 41.0 | 3.27e-01 | 80.0% | 91.6% |
| 6i6lA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 2.82e-01 | 87.3% | 23.2% |
| 4fs7A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.54 | 44.0 | 2.76e-01 | 100.0% | 42.6% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 41.0 | 3.18e-01 | 89.1% | 93.1% |
| 1u7nA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.54 | 42.0 | 2.73e-01 | 94.5% | 50.8% |
| 6h99A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 35.0 | 2.68e-01 | 70.9% | 61.6% |
| 4rlqA02 | 3.40.50.12820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 3.28e-01 | 76.4% | 53.3% |
| 1ydhA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 2.89e-01 | 87.3% | 48.4% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.51 | 37.0 | 2.76e-01 | 78.2% | 45.8% |
| 3h1tA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 34.0 | 2.55e-01 | 72.7% | 41.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972112 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.69 | 47.0 | 3.47e-01 | 70.9% | 43.8% |
| 4948121 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.68 | 42.0 | 3.23e-01 | 76.4% | 27.2% |
| 3684329 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.67 | 37.0 | 2.46e-01 | 72.7% | 14.1% |
| 3378455 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.63 | 36.0 | 3.21e-01 | 70.9% | 37.5% |
| 4451169 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.58 | 45.0 | 2.92e-01 | 83.6% | 27.2% |
| 4020114 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 2.72e-01 | 87.3% | 18.3% |
| 3197714 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 44.0 | 2.67e-01 | 85.5% | 17.9% |
| 4860876 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.55 | 42.0 | 3.08e-01 | 85.5% | 45.3% |
| 3387122 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 37.0 | 2.88e-01 | 70.9% | 42.3% |
| 4206587 | 2007.1.2.47 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DabA | 0.55 | 39.0 | 2.82e-01 | 76.4% | 68.6% |
| 4385628 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.55 | 42.0 | 2.75e-01 | 85.5% | 26.0% |
| 3309543 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 38.0 | 3.07e-01 | 74.5% | 73.9% |
| 3264162 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.53 | 40.0 | 2.73e-01 | 87.3% | 33.9% |
| 4430876 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.51 | 41.0 | 2.80e-01 | 100.0% | 26.7% |
| 3266153 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 42.0 | 2.45e-01 | 96.4% | 27.9% |
| 4632068 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.50 | 40.0 | 2.78e-01 | 100.0% | 27.1% |