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NC_005345.2__NP_958244.1__VWBp02__00003

Bact-Vir

NC_005345.2__NP_958244.1__VWBp02__00003

Identity

Accession:
NC_005345 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Veewebvirus› Streptomyces_phage_VWB

TaxID: 10702

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-83
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.94 65.0 6.31e-01 97.5% 65.1%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.90 69.0 6.24e-01 96.2% 61.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.90 64.0 7.03e-01 93.7% 89.4%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.88 65.0 7.21e-01 93.7% 96.8%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.87 66.0 7.23e-01 94.9% 95.5%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 66.0 7.04e-01 96.2% 92.8%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 61.0 6.46e-01 92.4% 84.5%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 73.0 7.55e-01 96.2% 100.0%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 66.0 6.28e-01 96.2% 71.7%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 65.0 6.86e-01 97.5% 92.9%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 63.0 6.83e-01 97.5% 95.5%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 65.0 6.91e-01 96.2% 94.2%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 62.0 6.42e-01 94.9% 86.3%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 59.0 6.55e-01 97.5% 100.0%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 63.0 6.01e-01 93.7% 71.4%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 63.0 6.53e-01 97.5% 89.2%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 62.0 6.13e-01 94.9% 77.4%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 61.0 6.10e-01 94.9% 79.0%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 63.0 6.06e-01 97.5% 74.4%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 61.0 6.62e-01 94.9% 98.5%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 69.0 5.79e-01 94.9% 58.6%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 62.0 5.96e-01 97.5% 78.7%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 58.0 6.21e-01 94.9% 98.5%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 65.0 6.34e-01 97.5% 87.1%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 51.0 5.55e-01 92.4% 86.4%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 66.0 6.21e-01 97.5% 83.9%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 59.0 6.04e-01 97.5% 92.1%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 61.0 6.07e-01 94.9% 87.8%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 59.0 6.17e-01 100.0% 100.0%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 58.0 5.61e-01 100.0% 83.9%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 56.0 5.49e-01 97.5% 89.3%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 54.0 4.52e-01 98.7% 95.7%
7emyA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.60 49.0 3.50e-01 93.7% 74.2%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.60 47.0 3.59e-01 91.1% 88.0%
1dulA00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.59 38.0 4.08e-01 92.4% 76.5%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 49.0 4.13e-01 97.5% 91.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 42.0 3.67e-01 83.5% 76.7%
3h7iA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 38.0 3.90e-01 72.2% 93.5%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 39.0 3.63e-01 77.2% 84.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.54 39.0 3.59e-01 77.2% 81.8%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 44.0 3.90e-01 96.2% 71.9%
3i8bA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.03e-01 84.8% 97.3%
2btdA00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.53 42.0 3.22e-01 92.4% 95.2%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.38e-01 94.9% 54.2%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 39.0 3.55e-01 83.5% 77.5%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.52 40.0 3.33e-01 87.3% 89.2%
4qqwA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.51 38.0 2.79e-01 81.0% 80.9%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.51 43.0 3.58e-01 94.9% 89.7%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 36.0 3.14e-01 79.7% 47.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084920 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.92 73.0 7.77e-01 98.7% 92.9%
4940726 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.91 69.0 7.58e-01 100.0% 95.4%
3278834 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.90 70.0 7.42e-01 94.9% 91.4%
3957550 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.89 66.0 7.03e-01 96.2% 87.1%
4031703 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.88 71.0 7.50e-01 97.5% 94.3%
3944738 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 69.0 7.07e-01 97.5% 86.7%
3978391 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.87 67.0 7.15e-01 96.2% 91.4%
381796 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 65.0 5.33e-01 93.7% 46.6%
3972208 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 67.0 6.91e-01 96.2% 85.3%
4507416 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.86 65.0 5.71e-01 93.7% 56.4%
3988657 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.85 64.0 7.04e-01 97.5% 96.9%
3288109 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.83 65.0 6.89e-01 98.7% 94.3%
3973014 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.80 61.0 6.58e-01 94.9% 96.9%
4455317 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 58.0 5.86e-01 94.9% 78.8%
5050903 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 65.0 6.70e-01 100.0% 94.7%
4937605 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 66.0 6.80e-01 94.9% 98.7%
4232911 101.1.4.74 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF27520 0.76 68.0 6.83e-01 97.5% 100.0%
3933635 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.72 60.0 5.89e-01 96.2% 85.9%
4679899 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.61 50.0 3.65e-01 92.4% 79.6%
3944356 101.1.10.42 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF4158 0.60 36.0 3.36e-01 88.6% 47.0%
4121769 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.58 47.0 3.38e-01 92.4% 78.8%
3458610 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.55 43.0 3.72e-01 86.1% 80.8%
4943203 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.53 39.0 3.44e-01 79.7% 84.0%
5032214 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 37.0 3.65e-01 73.4% 90.6%
3667415 376.1.3.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CRD 0.53 44.0 3.51e-01 93.7% 47.3%
3289114 148.1.3.251 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 0.52 36.0 3.78e-01 72.2% 92.9%
3581101 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 40.0 3.19e-01 86.1% 52.9%
3492714 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 39.0 3.12e-01 86.1% 50.0%
3394199 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.51 38.0 3.16e-01 78.5% 45.0%