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NC_005856.1__YP_006525.1__P1_gp057__00055

Bact-Vir

NC_005856.1__YP_006525.1__P1_gp057__00055

Identity

Accession:
NC_005856 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Punavirus› Escherichia_phage_P1

TaxID: 2886926

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-96_244-431
PDB
Domain cluster: rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tb6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 40.0 5.18e-01 89.9% 97.1%
1jx6A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 36.0 4.54e-01 88.3% 84.1%
6cv6D00 3.40.50.9100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II 0.66 39.0 4.93e-01 73.7% 97.9%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 42.0 5.11e-01 93.9% 98.1%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 33.0 4.13e-01 82.2% 80.3%
5c40B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 48.0 4.40e-01 80.6% 92.0%
1yjsA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 40.0 4.05e-01 85.8% 64.9%
3ry7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 47.0 4.39e-01 80.6% 93.4%
3b1dA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 41.0 4.36e-01 84.2% 76.4%
5xmvA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 41.0 4.02e-01 85.8% 65.0%
4yrbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 4.84e-01 95.1% 92.2%
2pgwA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 37.0 3.91e-01 94.7% 70.6%
3dtyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 40.0 4.59e-01 94.7% 96.1%
1tkkA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.56 37.0 3.81e-01 95.5% 65.6%
3mcnB02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.56 41.0 4.22e-01 94.7% 77.3%
3ihjA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 41.0 4.16e-01 84.2% 74.8%
3qllA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 38.0 4.05e-01 94.7% 79.5%
3r14A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 4.67e-01 92.7% 94.9%
1rqeA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 3.81e-01 95.1% 64.8%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 4.21e-01 95.1% 84.2%
1vr6A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 37.0 3.64e-01 95.1% 63.1%
3f4wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 37.0 4.02e-01 87.9% 82.0%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 41.0 4.08e-01 100.0% 75.1%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 37.0 4.01e-01 88.3% 81.4%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 4.40e-01 94.3% 98.7%
1dtnA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 38.0 3.91e-01 100.0% 77.4%
3iq0A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 46.0 4.28e-01 92.3% 98.4%
3go6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 4.42e-01 92.3% 99.0%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 36.0 3.46e-01 94.7% 60.1%
3cyjA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 37.0 3.86e-01 100.0% 75.9%
3ro6A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 38.0 3.89e-01 100.0% 76.7%
6kfmA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 40.0 3.98e-01 85.8% 74.0%
6ejiA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 38.0 4.33e-01 100.0% 100.0%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 38.0 3.84e-01 95.1% 74.0%
3v75A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 39.0 3.82e-01 95.1% 71.6%
3ayvD00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 38.0 3.89e-01 98.0% 78.3%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 32.0 3.83e-01 93.5% 94.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995822 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.88 83.0 8.26e-01 97.6% 94.9%
5004680 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.84 78.0 7.52e-01 96.8% 91.6%
3944167 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.80 75.0 7.23e-01 96.4% 91.5%
4975427 2007.15.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.67 36.0 4.86e-01 70.9% 97.7%
5027790 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.65 40.0 5.03e-01 93.5% 98.7%
4626165 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.62 40.0 4.27e-01 88.7% 73.2%
5051622 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 48.0 4.36e-01 80.6% 93.0%
4065547 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.60 47.0 4.49e-01 80.6% 94.7%
4963881 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.59 46.0 4.41e-01 80.6% 86.0%
4989583 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.58 41.0 4.41e-01 72.9% 92.2%
5057040 2002.1.1.66 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.57 38.0 4.06e-01 95.1% 74.5%
4245158 2002.1.1.66 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.56 40.0 4.01e-01 95.1% 68.5%
3289374 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.54 48.0 4.24e-01 91.9% 98.8%
4958031 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 40.0 4.48e-01 98.8% 96.9%
169576 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.54 37.0 4.02e-01 87.9% 82.0%
3954489 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.53 47.0 4.67e-01 93.1% 90.4%
3741705 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 46.0 4.34e-01 91.5% 97.0%
4353610 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 46.0 4.19e-01 91.9% 93.0%
4074536 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 46.0 4.20e-01 92.3% 92.4%
4980051 2002.1.1.9 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.53 38.0 4.02e-01 88.3% 81.4%
4977997 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.52 47.0 3.91e-01 93.1% 96.0%
4974794 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 36.0 4.25e-01 81.4% 100.0%
3504837 7512.1.1.31 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.52 41.0 4.47e-01 100.0% 97.1%
3538285 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 40.0 4.22e-01 100.0% 87.1%
4005656 2002.1.1.275 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, DHOase 0.52 42.0 3.47e-01 85.4% 76.0%
5075774 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 39.0 4.30e-01 93.1% 96.5%
3682937 7512.1.1.31 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.51 41.0 4.31e-01 98.8% 91.8%
4345478 2002.1.1.66 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.51 41.0 4.22e-01 95.1% 86.7%
3287111 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.51 45.0 3.75e-01 92.7% 96.8%
3260627 2002.1.1.54 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.51 44.0 3.87e-01 92.3% 90.7%
5036322 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.51 40.0 3.94e-01 94.3% 74.9%
4990088 2002.1.1.15 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.51 39.0 3.98e-01 88.3% 80.7%
4982125 2002.1.1.67 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.50 40.0 3.96e-01 97.6% 77.4%
D2 high residues 102-234
PDB
Domain cluster: rep: MT366761.1__QJT71116.1__GR11A_00079__00078__D93-218
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 28.0 4.18e-01 85.7% 100.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 30.0 3.62e-01 89.5% 71.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 30.0 3.79e-01 78.9% 84.0%
1x5zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 29.0 3.24e-01 90.2% 58.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 28.0 3.33e-01 72.9% 64.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 29.0 3.70e-01 85.7% 97.1%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 4.05e-01 88.7% 92.7%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.98e-01 88.7% 92.6%
1ddqC02 3.90.1100.10 Alpha Beta › Alpha-Beta Complex › Rna Polymerase Beta Subunit; Chain: C,domain 2 › 0.51 41.0 3.11e-01 87.2% 74.2%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.70e-01 88.0% 93.9%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 37.0 3.69e-01 75.9% 95.6%
6kxkB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 41.0 4.17e-01 87.2% 98.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995821 3629.1.1.0 ↗ beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain 0.83 77.0 7.24e-01 100.0% 94.4%
4946189 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 34.0 4.11e-01 77.4% 84.7%
3404544 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.54 33.0 3.45e-01 91.7% 64.8%
5034706 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 27.0 3.42e-01 78.9% 82.7%
3391508 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.53 44.0 3.99e-01 88.0% 96.1%
5013768 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.53 36.0 4.10e-01 82.7% 94.7%
3581700 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 44.0 4.36e-01 87.2% 97.9%
3245639 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 43.0 4.29e-01 86.5% 98.6%
3599301 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 43.0 4.18e-01 87.2% 95.3%
3799609 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 43.0 4.33e-01 87.2% 92.6%
5056218 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 26.0 3.36e-01 79.7% 87.1%
3233728 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 42.0 4.40e-01 87.2% 96.8%
3574658 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 43.0 4.31e-01 87.2% 96.3%
3499074 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 43.0 4.01e-01 87.2% 88.1%
5040972 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 27.0 3.41e-01 79.7% 86.7%
3491241 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 41.0 4.25e-01 85.0% 97.7%
3595463 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 42.0 4.28e-01 87.2% 94.6%
5080207 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 3.14e-01 72.2% 90.0%
D3 high residues 454-512
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.71 50.0 4.32e-01 100.0% 45.5%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.94e-01 91.5% 60.0%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.22e-01 74.6% 88.5%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.59 50.0 3.97e-01 98.3% 77.7%
5u89A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 41.0 3.61e-01 94.9% 47.8%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.58 48.0 4.05e-01 100.0% 52.7%
2bcqA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 47.0 3.76e-01 100.0% 44.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 2.99e-01 86.4% 83.9%
3a2vD02 3.30.1020.10 Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 0.53 41.0 3.49e-01 83.1% 94.7%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 43.0 3.69e-01 93.2% 82.8%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 46.0 3.18e-01 100.0% 51.9%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 42.0 3.33e-01 93.2% 82.0%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 32.0 2.58e-01 100.0% 30.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454761 4154.1.1.36 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › PF27048 0.68 48.0 4.56e-01 96.6% 62.9%
4294357 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.67 50.0 3.72e-01 100.0% 29.7%
3835500 192.15.1.163 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF27048 0.66 47.0 4.76e-01 96.6% 73.3%
3834680 4996.1.1.5 ↗ alpha arrays › DNA-binding domain of EIN3-like › DNA-binding domain of EIN3-like › DNA-binding domain of EIN3-like › PF27048 0.66 47.0 4.37e-01 96.6% 58.7%
3668727 263.1.1.6 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 0.64 48.0 4.24e-01 98.3% 55.3%
3340649 3926.1.1.0 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.63 49.0 3.62e-01 83.1% 61.3%
3421585 3887.2.1.0 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 0.63 46.0 4.19e-01 98.3% 57.5%
4929746 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 45.0 3.27e-01 74.6% 95.3%
3994812 902.1.1.0 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.62 33.0 4.14e-01 74.6% 100.0%
4792723 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.61 32.0 3.13e-01 76.3% 41.2%
3697453 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.61 52.0 3.32e-01 100.0% 23.4%
3743051 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.60 45.0 3.01e-01 79.7% 69.6%
3794245 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.60 49.0 3.39e-01 93.2% 50.7%
1697857 304.48.1.30 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.60 53.0 3.25e-01 100.0% 41.2%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 42.0 3.43e-01 76.3% 90.9%
3178536 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.58 50.0 2.95e-01 98.3% 86.2%
3499265 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.57 48.0 3.07e-01 100.0% 94.3%
4250601 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 46.0 3.32e-01 89.8% 59.4%
4441043 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 46.0 3.37e-01 89.8% 63.1%
3839743 102.1.1.28 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.57 41.0 2.91e-01 83.1% 23.6%
3972147 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.56 46.0 3.55e-01 96.6% 47.6%
3687002 148.1.1.7 ↗ alpha arrays › Histone-like › Histone-related › Histone › TAF 0.55 39.0 3.13e-01 74.6% 60.0%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 43.0 3.35e-01 91.5% 49.0%
3993477 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 2.77e-01 94.9% 24.0%
4028930 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 43.0 2.93e-01 100.0% 29.1%
4028937 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.53 45.0 2.54e-01 94.9% 25.3%
4492098 4043.1.1.1 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 0.52 35.0 2.87e-01 71.2% 73.3%
3635617 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 37.0 4.07e-01 91.5% 100.0%
4378801 7012.1.1.1 ↗ a+b complex topology › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Bac_transf 0.51 41.0 3.29e-01 93.2% 83.8%
3835922 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 42.0 3.43e-01 98.3% 46.7%