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NC_005857.1__YP_006629.1__phiKO2p49__00049
Bact-VirNC_005857.1__YP_006629.1__phiKO2p49__00049
Identity
- Accession:
- NC_005857 ↗
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-103
Domain cluster:
rep: MW291021.1__QPL14492.1__SEA_EHYELIMAYOE_177__00175__D3-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05973.21 best | Gp49 | 94.9 | 3.40e-27 | 88.1% | 100.0% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g5oC00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 60.0 | 6.47e-01 | 81.2% | 92.0% |
| 3bpqD00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 64.0 | 6.87e-01 | 89.1% | 100.0% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 64.0 | 6.77e-01 | 86.1% | 96.6% |
| 2otrA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.73 | 56.0 | 5.87e-01 | 80.2% | 94.4% |
| 2bcfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.66 | 58.0 | 4.35e-01 | 100.0% | 89.7% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.65 | 57.0 | 4.39e-01 | 99.0% | 95.8% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 47.0 | 3.61e-01 | 76.2% | 89.2% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 56.0 | 4.92e-01 | 100.0% | 66.0% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.63 | 33.0 | 4.47e-01 | 80.2% | 100.0% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.63 | 45.0 | 5.08e-01 | 81.2% | 97.4% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.63 | 45.0 | 4.20e-01 | 73.3% | 81.8% |
| 6izcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 53.0 | 4.01e-01 | 98.0% | 92.4% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 44.0 | 2.99e-01 | 75.2% | 27.7% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 43.0 | 2.93e-01 | 73.3% | 35.3% |
| 2wadA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 51.0 | 3.63e-01 | 100.0% | 86.7% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 39.0 | 3.75e-01 | 83.2% | 59.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.56 | 39.0 | 2.81e-01 | 74.3% | 34.9% |
| 3nv0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 3.65e-01 | 90.1% | 74.5% |
| 1s4cC00 | 2.60.120.370 | Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL | 0.52 | 42.0 | 3.76e-01 | 88.1% | 86.4% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 44.0 | 3.15e-01 | 95.0% | 77.0% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 36.0 | 3.57e-01 | 76.2% | 70.2% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.48e-01 | 82.2% | 73.9% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948814 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.98 | 96.0 | 9.45e-01 | 100.0% | 96.2% |
| 3944846 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.93 | 89.0 | 8.49e-01 | 100.0% | 93.9% |
| 3282412 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.93 | 89.0 | 8.19e-01 | 100.0% | 91.1% |
| 3588277 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.92 | 88.0 | 8.34e-01 | 100.0% | 95.7% |
| 5080833 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.91 | 87.0 | 8.60e-01 | 100.0% | 99.0% |
| 2523878 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.89 | 84.0 | 7.92e-01 | 100.0% | 93.3% |
| 3166135 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.89 | 77.0 | 7.99e-01 | 97.0% | 96.8% |
| 2832769 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.88 | 84.0 | 7.79e-01 | 100.0% | 87.6% |
| 3278065 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.88 | 83.0 | 8.02e-01 | 100.0% | 94.5% |
| 5014147 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.87 | 67.0 | 7.52e-01 | 85.1% | 100.0% |
| 5031617 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.87 | 65.0 | 7.29e-01 | 77.2% | 97.5% |
| 3977405 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.86 | 78.0 | 7.93e-01 | 96.0% | 98.0% |
| 3602698 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.84 | 66.0 | 7.17e-01 | 81.2% | 96.5% |
| 4460363 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.83 | 78.0 | 7.41e-01 | 100.0% | 93.9% |
| 4950220 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.83 | 68.0 | 7.20e-01 | 87.1% | 96.7% |
| 4887373 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.82 | 61.0 | 6.81e-01 | 78.2% | 97.5% |
| 4937019 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.82 | 69.0 | 7.30e-01 | 88.1% | 98.9% |
| 4937366 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.82 | 71.0 | 7.38e-01 | 94.1% | 98.9% |
| 4937737 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.82 | 64.0 | 6.89e-01 | 81.2% | 98.8% |
| 4948982 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.81 | 66.0 | 6.96e-01 | 85.1% | 96.7% |
| 3589620 | 4312.1.1.11 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin | 0.80 | 66.0 | 6.94e-01 | 88.1% | 96.7% |
| 169853 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.80 | 64.0 | 6.97e-01 | 89.1% | 100.0% |
| 3945861 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.80 | 67.0 | 7.08e-01 | 90.1% | 98.9% |
| 3956000 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.71 | 48.0 | 5.66e-01 | 81.2% | 100.0% |
| 5012352 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.70 | 52.0 | 5.66e-01 | 86.1% | 92.9% |
| 4965302 | 7089.1.1.8 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › PF25912 | 0.69 | 49.0 | 5.15e-01 | 73.3% | 100.0% |
| 4998648 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.67 | 51.0 | 5.25e-01 | 79.2% | 87.4% |
| 5030390 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.66 | 47.0 | 5.02e-01 | 83.2% | 85.4% |
| 3591236 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 46.0 | 2.81e-01 | 75.2% | 18.0% |
| 5034411 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 46.0 | 3.09e-01 | 75.2% | 34.1% |
| 4998603 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.64 | 44.0 | 4.99e-01 | 79.2% | 97.3% |
| 3608173 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 46.0 | 3.11e-01 | 76.2% | 37.3% |
| 1146563 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.63 | 45.0 | 5.10e-01 | 81.2% | 98.7% |
| 5007469 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.63 | 44.0 | 2.82e-01 | 73.3% | 21.3% |
| 3957605 | 243.1.1.35 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ORF_12_N | 0.62 | 41.0 | 4.26e-01 | 80.2% | 71.6% |
| 5035278 | 5.1.5.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta_propel | 0.62 | 44.0 | 3.44e-01 | 74.3% | 48.8% |
| 3601975 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 46.0 | 3.15e-01 | 79.2% | 31.7% |
| 4968133 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.61 | 47.0 | 4.94e-01 | 84.2% | 90.3% |
| 3709033 | 5.1.4.391 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CFAP43_N | 0.61 | 44.0 | 3.10e-01 | 74.3% | 35.7% |
| 5028369 | 5.1.4.87 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD | 0.60 | 43.0 | 3.11e-01 | 73.3% | 38.9% |
| 3459953 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.60 | 42.0 | 3.32e-01 | 72.3% | 52.7% |
| 3173290 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.59 | 43.0 | 2.91e-01 | 76.2% | 28.2% |
| 4028560 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.59 | 52.0 | 4.68e-01 | 100.0% | 73.4% |
| 3573803 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 46.0 | 3.26e-01 | 83.2% | 38.0% |
| 5053041 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 47.0 | 4.38e-01 | 100.0% | 68.1% |
| 3933016 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.58 | 42.0 | 2.98e-01 | 75.2% | 34.2% |
| 3482507 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.57 | 43.0 | 2.83e-01 | 81.2% | 55.1% |
| 5079117 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 40.0 | 2.85e-01 | 76.2% | 28.4% |
| 3577440 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.54 | 37.0 | 3.60e-01 | 70.3% | 73.0% |
| 3934301 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.54 | 42.0 | 3.35e-01 | 84.2% | 72.1% |
| 3709449 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 39.0 | 2.81e-01 | 75.2% | 35.6% |
| 3788862 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 39.0 | 2.63e-01 | 75.2% | 32.8% |
| 3479080 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 35.0 | 3.73e-01 | 79.2% | 78.4% |
| 4169890 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.52 | 43.0 | 2.77e-01 | 93.1% | 38.1% |
| 4430771 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 32.0 | 2.86e-01 | 86.1% | 42.8% |
| 3480636 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 44.0 | 2.85e-01 | 99.0% | 38.0% |