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YP_015522.1

Arc-Vir

NC_005872__YP_015522.1__PyrSV-gp01__00001

Identity

Accession:
NC_005872 ↗
Protein ID:
YP_015522.1 ↗
Kingdom:
archaea

Quality

64.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-105
PDB
D2 high residues 148-241
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.67e-01 100.0% 63.0%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 37.0 3.77e-01 97.9% 57.1%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 56.0 5.51e-01 96.8% 94.0%
1yreC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 53.0 4.25e-01 94.7% 48.4%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.60e-01 100.0% 80.6%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.84e-01 100.0% 49.3%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.60 41.0 4.40e-01 70.2% 89.6%
4wbtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 44.0 3.90e-01 91.5% 52.1%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 50.0 4.51e-01 93.6% 91.0%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.52e-01 98.9% 80.9%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.68e-01 94.7% 86.8%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 4.63e-01 91.5% 98.5%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.58 47.0 5.00e-01 94.7% 100.0%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.93e-01 100.0% 56.8%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 45.0 4.74e-01 97.9% 96.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.40e-01 100.0% 79.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 34.0 3.24e-01 97.9% 49.1%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 35.0 3.82e-01 70.2% 78.1%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 47.0 4.00e-01 93.6% 54.8%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 41.0 4.50e-01 97.9% 100.0%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 42.0 3.35e-01 78.7% 88.2%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 35.0 3.95e-01 73.4% 85.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.69e-01 100.0% 52.8%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 44.0 3.78e-01 100.0% 53.4%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.55 39.0 4.35e-01 86.2% 100.0%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.51e-01 100.0% 95.2%
2jisA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 41.0 3.10e-01 79.8% 41.4%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 49.0 4.46e-01 100.0% 88.2%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 45.0 4.40e-01 92.6% 85.4%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 45.0 3.98e-01 95.7% 61.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 3.75e-01 87.2% 72.4%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.54 40.0 3.21e-01 76.6% 95.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.74e-01 93.6% 66.3%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.01e-01 100.0% 71.4%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 45.0 3.89e-01 97.9% 96.9%
1cg2A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 3.05e-01 86.2% 95.0%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.53 40.0 4.22e-01 94.7% 95.2%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.61e-01 100.0% 56.0%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.53 34.0 2.65e-01 100.0% 30.3%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 4.05e-01 83.0% 94.7%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.85e-01 84.0% 81.2%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.11e-01 85.1% 100.0%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 33.0 3.72e-01 71.3% 87.1%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 43.0 4.43e-01 96.8% 98.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.70e-01 85.1% 75.8%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 44.0 4.45e-01 97.9% 97.9%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.65e-01 92.6% 71.7%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 44.0 3.72e-01 98.9% 96.4%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.51 36.0 3.76e-01 84.0% 84.3%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 37.0 3.32e-01 77.7% 71.0%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 4.06e-01 83.0% 100.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3823903 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 58.0 5.43e-01 100.0% 85.2%
5055904 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.97e-01 100.0% 73.0%
3933404 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 42.0 3.62e-01 100.0% 41.3%
4045455 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 49.0 5.16e-01 100.0% 91.8%
3364232 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.63 50.0 5.23e-01 96.8% 94.1%
3821131 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.62 50.0 5.32e-01 98.9% 100.0%
5010793 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 45.0 4.98e-01 100.0% 97.3%
4125198 304.11.1.2 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.62 41.0 4.42e-01 75.5% 80.0%
5060836 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.61 50.0 4.79e-01 90.4% 79.1%
167429 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 44.0 3.84e-01 100.0% 49.3%
4480479 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.61 36.0 4.08e-01 70.2% 78.6%
3950166 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 49.0 5.07e-01 100.0% 96.6%
3875839 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 53.0 4.98e-01 100.0% 80.0%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 44.0 4.60e-01 100.0% 85.9%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 42.0 3.84e-01 100.0% 56.7%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 46.0 4.05e-01 100.0% 55.2%
3625612 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 52.0 5.14e-01 98.9% 91.0%
3167163 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.59 48.0 4.84e-01 98.9% 87.4%
4535381 101.1.2.603 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.59 42.0 3.17e-01 100.0% 31.1%
5080526 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 41.0 3.88e-01 95.7% 60.0%
3721121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.28e-01 100.0% 74.0%
3940330 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.59 45.0 4.77e-01 90.4% 95.2%
3699987 198.3.1.0 alpha arrays › Saposin-like › PAS factor › PAS factor 0.59 50.0 4.77e-01 97.9% 84.3%
5016457 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.78e-01 98.9% 94.1%
5005196 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.61e-01 100.0% 91.3%
4025655 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 38.0 3.79e-01 100.0% 64.2%
4926786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.67e-01 100.0% 95.0%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.58 41.0 3.49e-01 96.8% 45.7%
5031299 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.45e-01 100.0% 85.9%
3588817 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 49.0 4.54e-01 92.6% 82.5%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 43.0 4.44e-01 100.0% 84.4%
5065234 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.57 44.0 4.40e-01 95.7% 82.1%
3462675 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.57 45.0 4.72e-01 93.6% 98.8%
4938723 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 40.0 3.60e-01 93.6% 53.1%
5077585 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.57 43.0 4.44e-01 95.7% 86.7%
3589189 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.96e-01 86.2% 62.4%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.56 44.0 4.57e-01 100.0% 95.3%
5037176 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 43.0 4.39e-01 95.7% 86.7%
4957831 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 39.0 3.27e-01 92.6% 41.8%
4980177 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.56 44.0 4.10e-01 100.0% 67.5%
4992389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.24e-01 95.7% 82.1%
3461891 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.73e-01 79.8% 66.0%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.57e-01 92.6% 93.3%
1787814 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.55 45.0 3.88e-01 95.7% 56.2%
4968989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.99e-01 95.7% 81.2%
2388907 5104.1.1.2 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.54 45.0 4.04e-01 93.6% 87.6%
3592665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 48.0 4.64e-01 98.9% 90.4%
5076521 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.54 42.0 3.82e-01 100.0% 61.5%
5027113 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 4.19e-01 98.9% 92.5%
3781172 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.53 39.0 2.64e-01 100.0% 18.3%
3394689 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.28e-01 92.6% 97.1%
5042455 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.53 39.0 3.64e-01 96.8% 61.3%
4933713 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.52 35.0 3.98e-01 70.2% 100.0%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.49e-01 95.7% 54.3%
4934352 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 43.0 3.61e-01 100.0% 50.3%
4939519 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 39.0 3.77e-01 100.0% 69.1%
1147772 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.52 37.0 3.87e-01 92.6% 84.5%
3986782 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.52 38.0 3.24e-01 78.7% 50.9%
5044596 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.52 39.0 3.95e-01 88.3% 81.9%
3280999 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 37.0 3.19e-01 92.6% 45.8%
5013983 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 38.0 3.54e-01 91.5% 61.7%
3279731 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 40.0 4.04e-01 97.9% 85.3%
4399101 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.51 39.0 3.77e-01 95.7% 70.9%
3420624 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 41.0 4.04e-01 98.9% 80.0%
5039088 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.50 37.0 3.32e-01 91.5% 52.4%
5019927 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.67e-01 91.5% 74.5%
1296342 101.1.2.456 alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 0.50 38.0 3.33e-01 92.6% 52.4%