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YP_015531.1

Arc-Vir

NC_005872__YP_015531.1__PyrSV-gp10__00010

Identity

Accession:
NC_005872 ↗
Protein ID:
YP_015531.1 ↗
Kingdom:
archaea

Quality

77.0 mean pLDDT

Taxonomy

Globuloviridae› Alphaglobulovirus› Pyrobaculum_spherical_virus

TaxID: 270161

Cluster

View cluster (2 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-115_166-200_214-234
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.65 25.0 4.05e-01 81.3% 100.0%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 25.0 3.25e-01 72.5% 63.4%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 23.0 3.61e-01 79.5% 91.7%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 24.0 3.66e-01 81.3% 96.8%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 38.0 4.38e-01 84.2% 92.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 33.0 4.11e-01 78.9% 98.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 43.0 4.49e-01 83.0% 96.8%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 40.0 4.31e-01 80.7% 89.1%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.53 34.0 3.85e-01 86.0% 84.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.99e-01 83.0% 86.2%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.50 33.0 3.85e-01 87.7% 97.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037261 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.67 44.0 4.62e-01 85.4% 72.9%
5055280 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 41.0 4.37e-01 86.0% 77.9%
3782746 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 36.0 4.30e-01 75.4% 92.7%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 39.0 4.28e-01 85.4% 87.8%
3622582 243.1.1.41 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.55 37.0 4.37e-01 100.0% 100.0%
3255874 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 44.0 4.22e-01 87.1% 97.9%
3230598 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 40.0 4.29e-01 79.5% 97.3%
3933484 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 42.0 4.31e-01 84.2% 98.2%
5077103 5.1.11.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › PQQ_2 0.52 40.0 2.90e-01 78.4% 31.1%
3788774 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.51 39.0 4.19e-01 83.0% 92.4%
3794870 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 41.0 4.22e-01 83.0% 98.1%
3725129 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 41.0 4.30e-01 83.6% 95.5%
3742062 883.1.1.23 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.51 36.0 3.20e-01 73.1% 64.0%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 38.0 4.11e-01 84.8% 92.4%
5020831 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.50 36.0 4.14e-01 91.8% 100.0%
D2 medium residues 116-165_201-213
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ch7A02 3.30.70.3460 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 53.0 3.78e-01 79.4% 29.6%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.71 62.0 4.45e-01 98.4% 68.1%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.69 59.0 4.29e-01 100.0% 67.4%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 50.0 4.81e-01 79.4% 69.0%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.67 58.0 4.06e-01 98.4% 69.0%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.66 55.0 4.73e-01 93.7% 95.1%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.65 53.0 3.95e-01 95.2% 58.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 48.0 4.43e-01 79.4% 70.9%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.64 55.0 4.89e-01 100.0% 93.7%
2i0kA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.64 54.0 3.59e-01 98.4% 70.1%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.08e-01 79.4% 58.7%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.62 52.0 3.63e-01 98.4% 67.2%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.60 51.0 3.77e-01 96.8% 82.7%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.23e-01 79.4% 71.6%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 49.0 3.94e-01 100.0% 70.3%
3iylW01 3.90.1810.10 Alpha Beta › Alpha-Beta Complex › Reovirus components fold › Reovirus components 0.57 49.0 3.05e-01 98.4% 26.5%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 3.49e-01 100.0% 97.1%
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.56 41.0 3.76e-01 79.4% 65.9%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.56 45.0 3.51e-01 95.2% 79.7%
3qh6A00 3.10.129.150 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Domain of unknown function (DUF5070) 0.56 48.0 3.71e-01 95.2% 85.7%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.55 46.0 3.36e-01 100.0% 82.2%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 48.0 3.52e-01 100.0% 89.7%
1mwyA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.69e-01 74.6% 65.8%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.24e-01 95.2% 48.8%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.52 44.0 3.60e-01 95.2% 86.0%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 45.0 4.02e-01 96.8% 93.3%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 2.81e-01 74.6% 62.9%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.00e-01 95.2% 93.0%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.16e-01 95.2% 51.2%
1ywhC03 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 44.0 3.96e-01 95.2% 83.0%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.92e-01 74.6% 63.6%
2r2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 33.0 2.42e-01 92.1% 22.1%
6bx7A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 36.0 3.14e-01 79.4% 87.3%
1utbB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 38.0 3.03e-01 82.5% 43.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1698645 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.68 59.0 3.97e-01 98.4% 57.5%
2391478 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.64 55.0 4.89e-01 100.0% 93.7%
4995300 7523.1.1.30 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 0.63 55.0 4.30e-01 98.4% 60.7%
3619892 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.62 52.0 4.96e-01 98.4% 80.0%
5011939 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.61 51.0 4.07e-01 93.7% 70.8%
3608399 862.1.1.7 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 0.61 52.0 3.62e-01 100.0% 60.4%
3686839 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.61 52.0 4.35e-01 96.8% 70.9%
3952812 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 49.0 4.48e-01 95.2% 96.7%
3322697 390.1.1.6 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.60 51.0 4.63e-01 95.2% 72.9%
3196701 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.60 50.0 4.37e-01 95.2% 76.0%
3324097 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 49.0 4.54e-01 95.2% 72.9%
4024860 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 48.0 3.01e-01 90.5% 27.6%
3216877 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 50.0 4.58e-01 96.8% 80.0%
5024981 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.58 49.0 3.74e-01 98.4% 51.5%
3799573 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 49.0 4.08e-01 96.8% 62.6%
5060821 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.06e-01 73.0% 44.1%
3368215 390.1.1.6 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.57 48.0 4.50e-01 95.2% 78.8%
3512295 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 48.0 3.89e-01 95.2% 75.6%
4028488 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.56 45.0 3.56e-01 90.5% 87.9%
4991759 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.56 47.0 3.89e-01 96.8% 88.3%
4029307 10.32.1.180 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEP104_N 0.56 41.0 3.15e-01 77.8% 62.0%
3697697 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 47.0 4.00e-01 95.2% 66.1%
3689641 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 48.0 4.20e-01 95.2% 67.0%
3218195 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 49.0 4.43e-01 96.8% 90.6%
3665387 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.56 43.0 3.72e-01 87.3% 61.0%
3585693 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.55 48.0 4.23e-01 98.4% 82.1%
3196763 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.55 47.0 3.15e-01 98.4% 54.2%
4368682 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.55 38.0 3.38e-01 73.0% 80.0%
3881235 11.1.1.206 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D1 0.55 47.0 3.42e-01 95.2% 70.0%
4050326 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.54 46.0 4.30e-01 96.8% 93.8%
3239591 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.54 43.0 3.73e-01 88.9% 80.0%
4060103 4114.1.1.1 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase 0.54 45.0 3.24e-01 100.0% 79.5%
None — 0.54 38.0 2.72e-01 74.6% 24.3%
3572912 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.54 38.0 3.20e-01 100.0% 41.7%
3231279 11.1.1.959 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ILCR1_N 0.53 45.0 3.31e-01 93.7% 71.2%
4939206 304.156.1.3 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 0.53 46.0 3.76e-01 100.0% 70.4%
3838981 4114.1.1.1 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase 0.53 44.0 3.22e-01 100.0% 79.0%
5062730 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.53 33.0 3.08e-01 95.2% 47.5%
3415354 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.52 43.0 3.87e-01 93.7% 84.4%
4631252 11.1.1.637 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_D_N 0.52 44.0 3.40e-01 95.2% 75.2%
8275 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.52 43.0 3.99e-01 95.2% 84.5%
3534065 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.51 43.0 3.97e-01 95.2% 87.1%
3558498 11.1.1.206 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D1 0.51 43.0 3.17e-01 95.2% 67.6%
4939880 315.1.1.15 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF5402 0.51 40.0 3.29e-01 92.1% 63.8%
5032291 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.50 40.0 2.34e-01 95.2% 89.7%