←Back to structures

YP_015534.1

Arc-Vir

NC_005872__YP_015534.1__PyrSV-gp13__00013

Identity

Accession:: NC_005872 ↗
Protein ID:: YP_015534.1 ↗
Kingdom:: archaea

Quality

81.0 mean pLDDT

Taxonomy

Globuloviridae› Alphaglobulovirus› Pyrobaculum_spherical_virus

TaxID: 270161

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-105

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x5rA01	3.30.470.40	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 ›	0.90	81.0	7.38e-01	97.8%	73.9%
5i47B03	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.65	50.0	4.93e-01	100.0%	77.9%
7eehA01	2.60.120.620	Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain	0.57	45.0	3.36e-01	87.6%	72.7%
2z04B03	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.55	47.0	3.84e-01	100.0%	60.8%
1nrjA00	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.55	46.0	4.03e-01	97.8%	98.0%
1ng2A01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	27.0	3.42e-01	84.3%	95.5%
2pw4A00	1.10.3300.10	Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain	0.52	42.0	3.39e-01	91.0%	86.3%
1alo006	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.51	40.0	3.65e-01	86.5%	90.5%
4uejA01	3.90.180.10	Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain	0.50	40.0	3.14e-01	89.9%	76.9%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
119292	3149.1.1.1 ↗	a+b complex topology › Hypothetical protein ORF126 › Hypothetical protein ORF126 › Hypothetical protein ORF126 › ORF126-like	0.90	81.0	7.16e-01	97.8%	68.5%
3607227	4012.3.1.0 ↗	a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9	0.62	30.0	3.88e-01	98.9%	82.0%
3277542	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.59	49.0	4.13e-01	92.1%	78.7%
3028533	188.1.1.0 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain	0.56	42.0	2.99e-01	80.9%	70.7%
4947650	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	46.0	4.31e-01	93.3%	91.3%
3692189	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	47.0	4.08e-01	92.1%	74.1%
4944403	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	46.0	4.07e-01	93.3%	77.0%
5045308	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.54	44.0	3.57e-01	91.0%	67.2%
4962282	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.54	43.0	3.37e-01	86.5%	46.2%
4648475	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.54	27.0	3.23e-01	100.0%	71.7%
4999190	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	46.0	4.08e-01	100.0%	83.1%
3628286	223.2.1.33 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3	0.52	44.0	4.00e-01	100.0%	77.7%
4979823	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.51	41.0	4.00e-01	91.0%	94.0%
3593291	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	42.0	3.68e-01	96.6%	75.2%