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YP_015544.1
Arc-VirNC_005872__YP_015544.1__PyrSV-gp23__00023
Identity
- Accession:
- NC_005872 ↗
- Protein ID:
- YP_015544.1 ↗
- Kingdom:
- archaea
Quality
72.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-134
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ufcA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.74 | 65.0 | 4.16e-01 | 100.0% | 46.4% |
| 2rdyA01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.72 | 62.0 | 3.89e-01 | 100.0% | 54.5% |
| 1nh2D02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.68 | 44.0 | 5.03e-01 | 87.9% | 91.7% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.68 | 43.0 | 4.86e-01 | 87.9% | 86.0% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.67 | 43.0 | 4.96e-01 | 87.9% | 93.5% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 57.0 | 3.87e-01 | 100.0% | 94.4% |
| 6bs6B01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 54.0 | 4.94e-01 | 100.0% | 88.0% |
| 3es4A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 47.0 | 4.02e-01 | 83.3% | 81.0% |
| 3ttyA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 51.0 | 5.29e-01 | 100.0% | 100.0% |
| 2je8B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 47.0 | 4.20e-01 | 83.3% | 61.8% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 4.11e-01 | 83.3% | 64.6% |
| 3wy2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 49.0 | 4.77e-01 | 100.0% | 94.5% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 44.0 | 3.81e-01 | 84.8% | 57.4% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 38.0 | 4.18e-01 | 100.0% | 92.2% |
| 6f2mA01 | 3.30.200.190 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.55 | 45.0 | 3.94e-01 | 89.4% | 99.0% |
| 5ds1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.76e-01 | 81.8% | 100.0% |
| 1sq1A00 | 3.60.150.10 | Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC | 0.55 | 49.0 | 3.20e-01 | 100.0% | 93.0% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.54 | 47.0 | 3.67e-01 | 97.0% | 88.2% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 42.0 | 2.85e-01 | 87.9% | 68.3% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 41.0 | 3.58e-01 | 83.3% | 69.9% |
| 7jjtA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 45.0 | 4.21e-01 | 100.0% | 87.5% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 41.0 | 2.84e-01 | 87.9% | 69.5% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.54 | 45.0 | 4.00e-01 | 97.0% | 88.9% |
| 7pjjA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.45e-01 | 87.9% | 56.9% |
| 3wirA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.53 | 40.0 | 2.76e-01 | 83.3% | 83.5% |
| 2f8xC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.44e-01 | 84.8% | 54.3% |
| 1kkeA02 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.52 | 45.0 | 3.61e-01 | 100.0% | 92.2% |
| 6y2kA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 3.89e-01 | 100.0% | 98.0% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.47e-01 | 83.3% | 62.4% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.13e-01 | 98.5% | 78.5% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 38.0 | 3.02e-01 | 81.8% | 75.7% |
| 7vt9A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 42.0 | 4.11e-01 | 95.5% | 95.9% |
| 1shsA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 45.0 | 3.72e-01 | 100.0% | 85.2% |
| 3dmcA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 44.0 | 3.49e-01 | 97.0% | 74.6% |
| 1k82B01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.50 | 39.0 | 3.30e-01 | 90.9% | 74.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1031043 | 12.3.1.21 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 | 0.72 | 63.0 | 4.29e-01 | 100.0% | 85.1% |
| 3581366 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.69 | 47.0 | 2.80e-01 | 90.9% | 10.0% |
| 4025068 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.68 | 44.0 | 5.01e-01 | 89.4% | 89.8% |
| 2756321 | 74.1.1.1 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA_gamma_C | 0.68 | 43.0 | 4.73e-01 | 87.9% | 79.6% |
| 3995211 | 74.1.1.2 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA | 0.67 | 43.0 | 4.67e-01 | 89.4% | 79.6% |
| 4011292 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.67 | 43.0 | 5.06e-01 | 84.8% | 95.6% |
| 2770992 | 74.1.1.2 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA | 0.67 | 43.0 | 4.50e-01 | 87.9% | 71.7% |
| 3996676 | 74.1.1.1 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA_gamma_C | 0.67 | 45.0 | 4.70e-01 | 89.4% | 76.7% |
| 2771336 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.63 | 50.0 | 5.04e-01 | 100.0% | 86.6% |
| 4602894 | 12.1.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Malt_amylase_C | 0.61 | 53.0 | 5.14e-01 | 98.5% | 90.7% |
| 3797626 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.61 | 43.0 | 4.64e-01 | 95.5% | 88.9% |
| 3477410 | 74.1.1.1 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA_gamma_C | 0.61 | 40.0 | 4.64e-01 | 89.4% | 100.0% |
| 3753700 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.61 | 51.0 | 3.80e-01 | 97.0% | 77.8% |
| 1180071 | 10.12.1.49 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 | 0.60 | 53.0 | 4.42e-01 | 100.0% | 75.0% |
| 2814707 | 11.1.1.233 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase | 0.60 | 47.0 | 4.29e-01 | 83.3% | 65.5% |
| 4463657 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 49.0 | 4.99e-01 | 100.0% | 95.4% |
| 4070018 | 12.1.1.75 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C | 0.59 | 50.0 | 4.92e-01 | 97.0% | 95.7% |
| 5054834 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 3.68e-01 | 83.3% | 59.1% |
| 185192 | 11.1.1.205 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5001 | 0.57 | 43.0 | 3.97e-01 | 81.8% | 64.0% |
| 4951344 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.57 | 37.0 | 3.09e-01 | 89.4% | 39.1% |
| 4947204 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 49.0 | 4.05e-01 | 100.0% | 90.0% |
| 3246533 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 41.0 | 2.79e-01 | 90.9% | 55.7% |
| 3936843 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 40.0 | 2.77e-01 | 89.4% | 61.9% |
| 3738581 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 42.0 | 2.85e-01 | 90.9% | 67.4% |
| 3581460 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.53 | 41.0 | 2.79e-01 | 90.9% | 63.9% |
| 3923528 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 41.0 | 2.80e-01 | 90.9% | 65.8% |
| 3258219 | 11.1.1.793 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 | 0.53 | 41.0 | 3.59e-01 | 84.8% | 58.0% |
| 3251294 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.93e-01 | 93.9% | 89.5% |
| 3201205 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 42.0 | 2.77e-01 | 90.9% | 78.3% |
| 3517508 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 46.0 | 4.09e-01 | 98.5% | 86.3% |
| 5027302 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.52 | 32.0 | 3.59e-01 | 80.3% | 84.0% |
| 3505449 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 47.0 | 4.04e-01 | 100.0% | 81.0% |
| 4097523 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.51 | 37.0 | 2.54e-01 | 81.8% | 83.8% |
| 4947872 | 3124.1.1.2 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › UBA_HYPK | 0.51 | 31.0 | 3.15e-01 | 81.8% | 63.1% |
| 3587789 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 33.0 | 2.89e-01 | 92.4% | 41.9% |
| 3274851 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.49e-01 | 84.8% | 60.0% |