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YP_015562.1

Arc-Vir

NC_005872__YP_015562.1__PyrSV-gp41__00041

Identity

Accession:
NC_005872 ↗
Protein ID:
YP_015562.1 ↗
Kingdom:
archaea

Quality

78.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-64
PDB
D2 high residues 71-158
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 48.0 5.18e-01 72.7% 81.3%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 49.0 4.20e-01 73.9% 52.2%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.68 48.0 4.15e-01 75.0% 48.6%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 50.0 3.47e-01 78.4% 89.7%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.67 56.0 4.22e-01 88.6% 62.3%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.67 55.0 4.31e-01 87.5% 71.9%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.66 59.0 3.94e-01 100.0% 68.1%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 47.0 3.72e-01 73.9% 88.2%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 49.0 3.27e-01 79.5% 37.8%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.64 51.0 3.63e-01 85.2% 86.0%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 43.0 3.86e-01 70.5% 96.8%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 47.0 4.34e-01 90.9% 61.4%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 49.0 4.16e-01 84.1% 71.1%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 45.0 4.10e-01 77.3% 82.2%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.61 56.0 3.82e-01 98.9% 54.3%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.61 54.0 3.56e-01 97.7% 61.5%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.59 48.0 3.74e-01 92.0% 73.7%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 43.0 3.77e-01 78.4% 98.5%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 3.19e-01 81.8% 66.2%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 4.04e-01 94.3% 66.1%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 53.0 4.57e-01 98.9% 80.2%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.58 51.0 3.66e-01 98.9% 72.9%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.78e-01 80.7% 86.4%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.69e-01 87.5% 71.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 50.0 4.35e-01 98.9% 71.9%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.55 45.0 3.76e-01 90.9% 86.3%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 46.0 3.93e-01 90.9% 83.0%
2cy9B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 45.0 3.93e-01 89.8% 84.1%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.54 47.0 3.54e-01 93.2% 72.5%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 43.0 4.04e-01 86.4% 93.7%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 47.0 3.95e-01 100.0% 70.7%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 47.0 3.36e-01 97.7% 93.8%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 44.0 3.86e-01 88.6% 87.1%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.54 45.0 3.53e-01 93.2% 84.3%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.56e-01 88.6% 70.7%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.53 38.0 3.65e-01 76.1% 78.1%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 49.0 4.52e-01 98.9% 90.8%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.79e-01 89.8% 66.9%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.89e-01 90.9% 93.7%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.56e-01 80.7% 91.0%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.51e-01 79.5% 92.7%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 39.0 2.97e-01 79.5% 91.9%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 42.0 3.91e-01 89.8% 94.6%
1zkiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.86e-01 90.9% 90.4%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.35e-01 76.1% 94.5%
2a15A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.47e-01 81.8% 91.7%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.44e-01 76.1% 62.6%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.41e-01 79.5% 90.0%
3dukA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.39e-01 77.3% 92.0%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.66e-01 89.8% 80.0%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.58e-01 88.6% 86.8%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 45.0 4.13e-01 100.0% 95.7%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.55e-01 85.2% 92.7%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 42.0 3.33e-01 90.9% 99.4%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 43.0 3.67e-01 100.0% 81.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991720 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.82 52.0 4.56e-01 71.6% 45.6%
3412551 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.79 50.0 5.46e-01 76.1% 77.0%
3734952 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.72 59.0 4.58e-01 88.6% 45.4%
5069097 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.71 53.0 4.72e-01 77.3% 79.2%
3959063 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.71 51.0 4.23e-01 75.0% 96.0%
3362635 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.70 54.0 4.80e-01 81.8% 100.0%
3293131 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.70 56.0 3.94e-01 84.1% 94.7%
4508852 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.69 54.0 4.93e-01 83.0% 83.5%
5062234 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.69 51.0 4.56e-01 77.3% 77.5%
2410295 5084.5.4.3 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › PorV 0.69 60.0 4.46e-01 96.6% 84.4%
5079500 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.68 49.0 3.86e-01 76.1% 55.6%
3216011 243.1.1.109 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382, DUF5382_C 0.67 48.0 3.33e-01 75.0% 43.1%
3761947 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.67 55.0 3.78e-01 88.6% 33.4%
3965735 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.66 49.0 4.98e-01 86.4% 80.0%
5052595 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 50.0 3.18e-01 83.0% 39.1%
4241521 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.64 55.0 3.70e-01 92.0% 43.5%
3248518 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.63 45.0 3.99e-01 75.0% 52.0%
3740970 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.63 45.0 3.01e-01 75.0% 28.3%
3790328 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.63 45.0 3.16e-01 76.1% 50.3%
3184285 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 52.0 3.92e-01 89.8% 49.8%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.62 50.0 4.42e-01 85.2% 63.4%
4016644 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.62 55.0 4.66e-01 100.0% 78.5%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 44.0 3.69e-01 73.9% 46.2%
4523830 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.62 44.0 4.12e-01 75.0% 60.9%
3535752 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.91e-01 78.4% 80.7%
3299304 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.62 48.0 3.81e-01 85.2% 63.2%
4873102 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 55.0 4.84e-01 98.9% 93.8%
5002153 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 46.0 4.45e-01 80.7% 91.0%
3601683 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.61 56.0 3.73e-01 97.7% 96.1%
4015830 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.26e-01 94.3% 32.7%
3739446 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 47.0 4.63e-01 87.5% 77.9%
3602029 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.60 41.0 3.18e-01 75.0% 31.8%
3620764 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.59 48.0 3.74e-01 89.8% 81.5%
4028247 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 47.0 3.08e-01 86.4% 39.9%
3277627 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 38.0 3.52e-01 71.6% 50.4%
3611189 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.58 48.0 3.90e-01 89.8% 86.5%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 51.0 4.80e-01 100.0% 80.9%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.57 40.0 3.44e-01 73.9% 52.0%
3254046 243.1.1.9 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.57 43.0 3.67e-01 83.0% 79.2%
3760326 3291.1.1.50 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 0.57 47.0 3.78e-01 90.9% 92.0%
3976425 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.56 50.0 3.81e-01 98.9% 53.8%
4014154 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 44.0 3.77e-01 87.5% 82.8%
3232806 216.1.1.26 a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.55 45.0 3.84e-01 89.8% 91.3%
349048 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 46.0 3.93e-01 90.9% 83.0%
2546362 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.55 36.0 2.87e-01 83.0% 31.6%
3247589 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 41.0 3.61e-01 80.7% 91.0%
4940923 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 4.07e-01 80.7% 83.7%
4928614 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.54 47.0 4.18e-01 97.7% 94.5%
3984778 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 44.0 3.23e-01 87.5% 34.2%
3938215 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.53 39.0 3.39e-01 77.3% 82.0%
4014757 9.13.1.4 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.53 46.0 4.08e-01 100.0% 71.9%
3184149 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 41.0 3.62e-01 84.1% 88.9%
3783000 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 42.0 4.13e-01 97.7% 82.1%
3705250 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 42.0 3.30e-01 84.1% 100.0%
4951358 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 44.0 3.87e-01 90.9% 90.8%
1401858 71.1.1.6 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.52 39.0 2.97e-01 79.5% 91.9%
3217076 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.52 37.0 3.40e-01 73.9% 96.5%
3415184 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.52 46.0 3.30e-01 100.0% 96.0%
3419997 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 37.0 3.47e-01 75.0% 66.1%
3791149 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.51 44.0 2.99e-01 97.7% 34.7%
3613814 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 39.0 3.40e-01 84.1% 90.0%
3995515 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 44.0 3.06e-01 97.7% 40.9%