←Back to structures
NC_005882.1__YP_024682.1__BcepMu09__00009
Bact-VirNC_005882.1__YP_024682.1__BcepMu09__00009
Identity
- Accession:
- NC_005882 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Taxonomy
TaxID: 2881392
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02954.26 best | HTH_8 | 23.8 | 4.20e-05 | 44.7% | 45.2% |
CATH (69)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.84 | 57.0 | 4.85e-01 | 72.3% | 44.6% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 57.0 | 5.06e-01 | 74.5% | 51.5% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.80 | 58.0 | 5.77e-01 | 100.0% | 75.0% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 54.0 | 5.09e-01 | 72.3% | 63.8% |
| 2dn0A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.79 | 64.0 | 5.48e-01 | 100.0% | 56.6% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 59.0 | 4.95e-01 | 100.0% | 48.8% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.77 | 51.0 | 4.33e-01 | 72.3% | 41.2% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 63.0 | 5.65e-01 | 100.0% | 65.7% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 61.0 | 5.47e-01 | 100.0% | 63.2% |
| 1wh5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 64.0 | 5.45e-01 | 100.0% | 60.0% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 59.0 | 5.32e-01 | 100.0% | 63.2% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 55.0 | 5.13e-01 | 100.0% | 63.9% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.73 | 63.0 | 4.92e-01 | 100.0% | 86.8% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 59.0 | 5.42e-01 | 100.0% | 68.2% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 53.0 | 5.45e-01 | 100.0% | 84.4% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.73 | 55.0 | 5.71e-01 | 95.7% | 97.6% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 54.0 | 5.18e-01 | 100.0% | 72.2% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 62.0 | 5.63e-01 | 100.0% | 72.7% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 60.0 | 4.46e-01 | 100.0% | 72.2% |
| 1le8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 56.0 | 5.47e-01 | 100.0% | 81.1% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 52.0 | 5.60e-01 | 95.7% | 97.4% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 61.0 | 4.54e-01 | 100.0% | 72.5% |
| 2cqqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 55.0 | 5.00e-01 | 100.0% | 64.2% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 54.0 | 5.11e-01 | 100.0% | 70.5% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.69 | 59.0 | 3.71e-01 | 100.0% | 33.5% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 51.0 | 5.02e-01 | 95.7% | 76.0% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 58.0 | 4.64e-01 | 100.0% | 50.5% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 52.0 | 4.61e-01 | 100.0% | 56.3% |
| 2gnoA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.69 | 60.0 | 4.72e-01 | 100.0% | 48.0% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 5.34e-01 | 100.0% | 91.5% |
| 1s3jA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 4.75e-01 | 100.0% | 62.5% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 47.0 | 4.84e-01 | 91.5% | 77.3% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 52.0 | 5.49e-01 | 97.9% | 97.6% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 50.0 | 4.89e-01 | 100.0% | 74.1% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 53.0 | 4.82e-01 | 100.0% | 64.7% |
| 4a0zA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 5.04e-01 | 95.7% | 74.6% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 49.0 | 4.79e-01 | 100.0% | 73.2% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 49.0 | 4.17e-01 | 85.1% | 81.0% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 51.0 | 5.19e-01 | 100.0% | 93.6% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.65 | 51.0 | 4.54e-01 | 100.0% | 58.5% |
| 2x26A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.65 | 55.0 | 3.69e-01 | 97.9% | 73.5% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 53.0 | 5.34e-01 | 100.0% | 93.6% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 4.76e-01 | 100.0% | 76.4% |
| 2de2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 55.0 | 3.63e-01 | 97.9% | 69.1% |
| 4f03B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 52.0 | 3.81e-01 | 100.0% | 31.7% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 50.0 | 4.27e-01 | 100.0% | 82.8% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 50.0 | 4.43e-01 | 91.5% | 59.4% |
| 6j3eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 52.0 | 3.73e-01 | 100.0% | 30.3% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.63 | 48.0 | 3.64e-01 | 85.1% | 87.2% |
| 4a18Q01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.63 | 50.0 | 4.61e-01 | 100.0% | 66.7% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 52.0 | 4.76e-01 | 100.0% | 71.6% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 52.0 | 4.60e-01 | 100.0% | 66.7% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.62 | 48.0 | 4.04e-01 | 89.4% | 74.1% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.59e-01 | 95.7% | 74.1% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.61 | 52.0 | 4.49e-01 | 100.0% | 69.6% |
| 4n5qA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.61 | 48.0 | 3.12e-01 | 93.6% | 26.1% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 47.0 | 4.01e-01 | 85.1% | 59.7% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 48.0 | 3.52e-01 | 91.5% | 33.1% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 45.0 | 3.68e-01 | 89.4% | 41.6% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.58 | 48.0 | 4.57e-01 | 95.7% | 94.7% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 47.0 | 3.10e-01 | 95.7% | 54.4% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.79e-01 | 100.0% | 94.0% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 3.75e-01 | 100.0% | 48.1% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 42.0 | 4.20e-01 | 91.5% | 89.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 44.0 | 4.13e-01 | 97.9% | 70.1% |
| 2z0fA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.56 | 48.0 | 3.63e-01 | 100.0% | 94.3% |
| 1t0fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 3.70e-01 | 100.0% | 47.5% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 43.0 | 3.92e-01 | 97.9% | 62.7% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 47.0 | 4.12e-01 | 100.0% | 91.9% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963650 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.95 | 84.0 | 8.25e-01 | 95.7% | 90.0% |
| 3979215 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 78.0 | 7.41e-01 | 97.9% | 87.3% |
| 3970951 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 63.0 | 6.20e-01 | 100.0% | 74.0% |
| 3574083 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.83 | 69.0 | 7.03e-01 | 100.0% | 95.6% |
| 3579029 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.82 | 67.0 | 5.69e-01 | 100.0% | 55.1% |
| 3404621 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.82 | 72.0 | 5.81e-01 | 100.0% | 62.2% |
| 4944587 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.81 | 69.0 | 5.42e-01 | 100.0% | 47.6% |
| 2674763 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.81 | 55.0 | 4.73e-01 | 74.5% | 45.3% |
| 3390891 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.81 | 71.0 | 5.72e-01 | 100.0% | 62.2% |
| 3951854 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.80 | 55.0 | 5.10e-01 | 72.3% | 61.7% |
| 3519655 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.80 | 70.0 | 4.86e-01 | 100.0% | 96.1% |
| 3998040 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.80 | 70.0 | 4.68e-01 | 100.0% | 90.5% |
| 2556 | 101.1.1.43 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Mor | 0.80 | 58.0 | 5.77e-01 | 100.0% | 75.0% |
| 3669646 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.80 | 64.0 | 6.15e-01 | 100.0% | 78.2% |
| 4248203 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.79 | 69.0 | 4.53e-01 | 100.0% | 74.9% |
| 3233859 | 226.1.1.5 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ | 0.79 | 58.0 | 4.12e-01 | 78.7% | 29.6% |
| 3411217 | 101.1.1.319 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-binding_2 | 0.79 | 64.0 | 4.38e-01 | 100.0% | 26.1% |
| 3237714 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 65.0 | 6.68e-01 | 100.0% | 95.6% |
| 4949368 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 68.0 | 6.48e-01 | 100.0% | 83.6% |
| 3924925 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.78 | 67.0 | 5.09e-01 | 100.0% | 81.7% |
| 3887051 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.78 | 67.0 | 5.48e-01 | 100.0% | 62.2% |
| 3322326 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.77 | 66.0 | 4.15e-01 | 100.0% | 18.8% |
| 3575981 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.77 | 66.0 | 5.58e-01 | 97.9% | 91.3% |
| 3994528 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.77 | 62.0 | 5.80e-01 | 100.0% | 71.7% |
| 4997853 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 61.0 | 6.02e-01 | 100.0% | 86.0% |
| 4599923 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 62.0 | 5.50e-01 | 100.0% | 61.4% |
| 3216569 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.76 | 61.0 | 5.90e-01 | 100.0% | 78.2% |
| 4028657 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 62.0 | 5.77e-01 | 100.0% | 71.7% |
| 2796737 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.76 | 65.0 | 6.00e-01 | 100.0% | 79.0% |
| 3244523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 61.0 | 6.00e-01 | 100.0% | 86.0% |
| 3996572 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.76 | 61.0 | 6.25e-01 | 100.0% | 95.6% |
| 3626749 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.76 | 61.0 | 5.57e-01 | 100.0% | 66.2% |
| 3854655 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.75 | 60.0 | 5.96e-01 | 100.0% | 86.0% |
| 4946659 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 62.0 | 4.86e-01 | 100.0% | 43.6% |
| 3227458 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.75 | 60.0 | 5.59e-01 | 100.0% | 71.7% |
| 4093017 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.75 | 64.0 | 5.55e-01 | 100.0% | 68.0% |
| 3536325 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 65.0 | 6.23e-01 | 100.0% | 90.9% |
| 3932555 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.75 | 59.0 | 5.18e-01 | 100.0% | 57.3% |
| 3493693 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.75 | 59.0 | 5.28e-01 | 100.0% | 61.4% |
| 2056101 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.74 | 63.0 | 5.72e-01 | 97.9% | 72.3% |
| 3538312 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.74 | 60.0 | 5.91e-01 | 100.0% | 86.0% |
| 4046675 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.73 | 62.0 | 5.20e-01 | 100.0% | 56.5% |
| 4261007 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.73 | 61.0 | 5.55e-01 | 97.9% | 70.8% |
| 3271918 | 101.1.1.201 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Bot1p | 0.73 | 60.0 | 5.30e-01 | 100.0% | 62.9% |
| 3243491 | 101.1.1.289 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB | 0.72 | 62.0 | 5.80e-01 | 100.0% | 78.3% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.72 | 58.0 | 4.94e-01 | 100.0% | 53.8% |
| 3217489 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.72 | 58.0 | 5.71e-01 | 100.0% | 86.0% |
| 3655985 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.72 | 63.0 | 4.62e-01 | 100.0% | 97.6% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.71 | 61.0 | 4.74e-01 | 100.0% | 84.4% |
| 3283752 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.71 | 59.0 | 4.82e-01 | 100.0% | 48.4% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.71 | 59.0 | 4.02e-01 | 100.0% | 25.3% |
| 3778380 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 60.0 | 5.39e-01 | 100.0% | 71.4% |
| 4069869 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.71 | 59.0 | 4.35e-01 | 95.7% | 36.4% |
| 5077611 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 56.0 | 4.22e-01 | 100.0% | 34.4% |
| 3243507 | 101.1.1.289 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB | 0.70 | 59.0 | 5.41e-01 | 100.0% | 72.3% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 58.0 | 4.67e-01 | 100.0% | 94.0% |
| 4977346 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 52.0 | 5.13e-01 | 100.0% | 80.0% |
| 5010443 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.69 | 58.0 | 3.37e-01 | 97.9% | 11.0% |
| 3886164 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 57.0 | 5.68e-01 | 100.0% | 96.0% |
| 3241028 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.68 | 59.0 | 4.92e-01 | 100.0% | 63.5% |
| 3837816 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 55.0 | 4.12e-01 | 100.0% | 36.7% |
| 4020328 | 101.1.1.35 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq | 0.67 | 56.0 | 5.68e-01 | 100.0% | 100.0% |
| 3704050 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 5.13e-01 | 95.7% | 88.0% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 56.0 | 4.89e-01 | 100.0% | 69.3% |
| 4201679 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 4.49e-01 | 100.0% | 54.1% |
| 4033200 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 51.0 | 5.18e-01 | 91.5% | 93.3% |
| 3222238 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.65 | 56.0 | 4.98e-01 | 100.0% | 78.6% |
| 3257506 | 101.1.1.333 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N | 0.65 | 52.0 | 4.64e-01 | 100.0% | 61.3% |
| 3285588 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 52.0 | 4.37e-01 | 100.0% | 75.8% |
| 3200990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 51.0 | 3.75e-01 | 97.9% | 30.7% |
| 4941656 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.49e-01 | 100.0% | 57.5% |
| 3353941 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.62 | 51.0 | 4.66e-01 | 95.7% | 80.0% |
| 3738604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 53.0 | 4.14e-01 | 100.0% | 71.4% |
| 4345364 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.60 | 47.0 | 4.48e-01 | 97.9% | 80.0% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 4.65e-01 | 100.0% | 78.3% |
| 3936162 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.60 | 49.0 | 5.03e-01 | 93.6% | 97.8% |
| 3269094 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.59 | 47.0 | 4.50e-01 | 95.7% | 86.7% |
| 5032612 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.69e-01 | 100.0% | 87.3% |
| 4319158 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.58 | 46.0 | 3.68e-01 | 100.0% | 60.9% |
| 3407657 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.57 | 42.0 | 3.59e-01 | 93.6% | 45.0% |
D2
high
residues 68-140
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 4.59e-01 | 100.0% | 66.3% |
| 2k9sA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 45.0 | 4.00e-01 | 100.0% | 52.3% |
| 2mdgA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 22.0 | 2.54e-01 | 86.3% | 40.0% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.62 | 39.0 | 3.97e-01 | 100.0% | 63.5% |
| 5bpdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.64e-01 | 98.6% | 80.0% |
| 1xd7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.96e-01 | 100.0% | 51.7% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 4.57e-01 | 100.0% | 73.9% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 47.0 | 4.79e-01 | 100.0% | 89.0% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.59e-01 | 100.0% | 81.2% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 4.57e-01 | 100.0% | 94.6% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.48e-01 | 100.0% | 74.5% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.43e-01 | 100.0% | 78.2% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.56 | 48.0 | 4.27e-01 | 100.0% | 78.9% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 3.57e-01 | 100.0% | 44.5% |
| 2vrdA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 30.0 | 3.26e-01 | 71.2% | 59.0% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 33.0 | 3.06e-01 | 90.4% | 44.7% |
| 3oioA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 38.0 | 3.39e-01 | 100.0% | 49.1% |
| 2pg4A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 4.08e-01 | 100.0% | 78.0% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 38.0 | 2.92e-01 | 83.6% | 64.9% |
| 3skvA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 39.0 | 2.92e-01 | 100.0% | 31.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963649 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.99 | 95.0 | 8.71e-01 | 100.0% | 81.1% |
| 5017399 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.64 | 45.0 | 3.59e-01 | 100.0% | 36.0% |
| 1505887 | 386.1.1.74 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-Di19 | 0.62 | 22.0 | 2.54e-01 | 86.3% | 40.0% |
| 3442602 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.61 | 52.0 | 4.80e-01 | 100.0% | 79.0% |
| 3920267 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.42e-01 | 100.0% | 72.5% |
| 3166485 | 101.1.2.616 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27833 | 0.60 | 52.0 | 4.30e-01 | 100.0% | 71.4% |
| 3877553 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.60 | 49.0 | 4.46e-01 | 100.0% | 67.0% |
| 3832037 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 51.0 | 3.47e-01 | 100.0% | 27.1% |
| 3493459 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.58 | 45.0 | 4.38e-01 | 100.0% | 74.1% |
| 4943120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.10e-01 | 100.0% | 62.0% |
| 3601118 | 103.8.1.0 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain | 0.58 | 36.0 | 3.84e-01 | 71.2% | 70.8% |
| 3958385 | 101.1.2.670 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4194 | 0.58 | 51.0 | 4.62e-01 | 100.0% | 82.0% |
| 5061575 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 51.0 | 4.59e-01 | 100.0% | 73.0% |
| 3608630 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.57 | 36.0 | 3.81e-01 | 72.6% | 70.8% |
| 4501841 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.57 | 47.0 | 4.61e-01 | 100.0% | 85.0% |
| 4524873 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.57 | 48.0 | 4.60e-01 | 100.0% | 86.5% |
| 3634304 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.56 | 50.0 | 3.72e-01 | 100.0% | 40.0% |
| 3972090 | 101.1.2.668 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28010 | 0.56 | 46.0 | 4.47e-01 | 100.0% | 81.2% |
| 3407169 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.56 | 49.0 | 4.39e-01 | 100.0% | 81.9% |
| 4015761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 4.29e-01 | 100.0% | 73.7% |
| 3943947 | 150.1.2.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › PaaA_PaaC | 0.55 | 43.0 | 2.89e-01 | 87.7% | 47.5% |
| 4940184 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 4.20e-01 | 100.0% | 81.2% |
| 4996302 | 101.1.2.77 ↗ | alpha arrays › HTH › HTH › winged helix domain › ESCRT-II | 0.54 | 36.0 | 3.19e-01 | 83.6% | 45.5% |
| 4079854 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.53 | 41.0 | 4.08e-01 | 100.0% | 81.3% |
| 3592333 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.94e-01 | 100.0% | 84.6% |
| 3693835 | 601.1.1.90 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 | 0.53 | 42.0 | 3.27e-01 | 89.0% | 91.2% |
| 3338519 | 101.1.2.77 ↗ | alpha arrays › HTH › HTH › winged helix domain › ESCRT-II | 0.51 | 42.0 | 3.92e-01 | 98.6% | 71.6% |
| 3993626 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.51 | 43.0 | 4.11e-01 | 100.0% | 81.2% |
| 4958811 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 45.0 | 3.70e-01 | 100.0% | 68.1% |
| 3801001 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.50e-01 | 100.0% | 49.7% |
D3
high
residues 156-258_285-353
Domain cluster:
rep: NC_020866.1__YP_007676387.1__RHVG_00008__00008__D267-366_438-460
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.75 | 63.0 | 6.84e-01 | 97.1% | 100.0% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 67.0 | 6.98e-01 | 95.3% | 100.0% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 58.0 | 6.32e-01 | 100.0% | 100.0% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.70 | 59.0 | 6.27e-01 | 100.0% | 98.0% |
| 8ajkA02 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.63 | 26.0 | 3.27e-01 | 89.5% | 59.6% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.62 | 20.0 | 3.68e-01 | 86.6% | 100.0% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 30.0 | 3.65e-01 | 70.9% | 68.4% |
| 2nn6E00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 35.0 | 3.03e-01 | 97.1% | 40.4% |
| 1iqoA00 | 3.30.160.120 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hypothetical protein MTH1880 | 0.51 | 26.0 | 3.57e-01 | 79.1% | 96.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963648 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.94 | 92.0 | 8.19e-01 | 100.0% | 88.0% |
| 3979237 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 77.0 | 7.06e-01 | 100.0% | 89.0% |
| 4928272 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.75 | 64.0 | 6.85e-01 | 97.1% | 100.0% |
| 4141576 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.74 | 72.0 | 7.00e-01 | 100.0% | 95.7% |
| 4365857 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.74 | 70.0 | 6.93e-01 | 98.8% | 93.3% |
| 4336164 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.74 | 65.0 | 6.38e-01 | 99.4% | 86.7% |
| 2771818 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.74 | 61.0 | 6.16e-01 | 100.0% | 85.9% |
| 4567161 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 70.0 | 6.84e-01 | 100.0% | 95.1% |
| 5059876 | 2484.1.1.117 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 | 0.73 | 67.0 | 6.65e-01 | 100.0% | 93.1% |
| 4514946 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 70.0 | 6.65e-01 | 100.0% | 87.7% |
| 4494081 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 69.0 | 6.50e-01 | 100.0% | 85.5% |
| 4351609 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.72 | 69.0 | 6.64e-01 | 100.0% | 90.0% |
| 3970062 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 65.0 | 6.36e-01 | 100.0% | 87.6% |
| 3956610 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.71 | 69.0 | 6.17e-01 | 100.0% | 77.3% |
| 3982054 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.71 | 68.0 | 6.52e-01 | 98.8% | 91.6% |
| 3588051 | 2484.1.1.202 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 | 0.71 | 62.0 | 6.17e-01 | 100.0% | 87.8% |
| 3787139 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 60.0 | 5.96e-01 | 98.3% | 88.0% |
| 4599482 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.69 | 65.0 | 6.29e-01 | 100.0% | 90.0% |
| 3956973 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.68 | 66.0 | 5.84e-01 | 100.0% | 77.8% |
| 5060129 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 61.0 | 6.01e-01 | 100.0% | 88.3% |
| 3617779 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 58.0 | 5.58e-01 | 98.3% | 80.0% |
| 3352391 | 2484.1.1.103 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N | 0.68 | 45.0 | 5.10e-01 | 76.2% | 87.7% |
| 3947062 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.68 | 65.0 | 6.19e-01 | 100.0% | 88.7% |
| 3252345 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.63 | 60.0 | 5.39e-01 | 98.8% | 84.9% |
| 3257564 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 59.0 | 5.54e-01 | 98.8% | 86.5% |
| 3941386 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 56.0 | 5.44e-01 | 95.3% | 94.6% |
| 5073695 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.57 | 27.0 | 3.49e-01 | 91.3% | 76.0% |
| 4947221 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.56 | 26.0 | 3.52e-01 | 98.3% | 82.2% |
| 3232806 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.55 | 28.0 | 3.04e-01 | 99.4% | 55.3% |
| 4646093 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.51 | 30.0 | 3.13e-01 | 100.0% | 61.2% |
D4
high
residues 532-579
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.80 | 64.0 | 5.60e-01 | 100.0% | 57.9% |
| 1iqpA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.76 | 63.0 | 5.79e-01 | 100.0% | 71.9% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.76 | 62.0 | 5.19e-01 | 100.0% | 53.0% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 60.0 | 5.06e-01 | 100.0% | 53.0% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 58.0 | 4.87e-01 | 100.0% | 50.0% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 58.0 | 4.73e-01 | 89.6% | 83.9% |
| 4ggnB01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 58.0 | 5.49e-01 | 95.8% | 75.4% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 55.0 | 5.05e-01 | 100.0% | 65.7% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 52.0 | 4.70e-01 | 100.0% | 59.7% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 49.0 | 4.31e-01 | 79.2% | 65.3% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.67 | 55.0 | 3.97e-01 | 100.0% | 92.0% |
| 5vt9B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.67 | 53.0 | 4.79e-01 | 95.8% | 63.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.66 | 53.0 | 5.35e-01 | 100.0% | 97.9% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.64 | 53.0 | 4.79e-01 | 100.0% | 79.2% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.63 | 44.0 | 4.43e-01 | 79.2% | 75.0% |
| 2reoA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 44.0 | 2.93e-01 | 75.0% | 21.7% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.62 | 49.0 | 4.39e-01 | 95.8% | 81.6% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.60 | 51.0 | 4.37e-01 | 100.0% | 85.4% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 4.11e-01 | 70.8% | 73.3% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 4.17e-01 | 97.9% | 78.8% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 45.0 | 4.57e-01 | 95.8% | 91.7% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 48.0 | 3.05e-01 | 100.0% | 89.5% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.56 | 39.0 | 3.41e-01 | 75.0% | 87.2% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 47.0 | 4.56e-01 | 100.0% | 90.9% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.53 | 37.0 | 3.46e-01 | 72.9% | 77.0% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 42.0 | 3.74e-01 | 95.8% | 72.6% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.51 | 35.0 | 3.33e-01 | 79.2% | 79.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3244215 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.84 | 74.0 | 6.91e-01 | 100.0% | 80.0% |
| 3533133 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 71.0 | 6.00e-01 | 100.0% | 60.0% |
| 3890797 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 70.0 | 6.08e-01 | 100.0% | 64.0% |
| 3965423 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.77 | 65.0 | 6.31e-01 | 100.0% | 85.5% |
| 3224412 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.77 | 60.0 | 5.94e-01 | 95.8% | 84.0% |
| 3486206 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 64.0 | 5.66e-01 | 100.0% | 70.7% |
| 159498 | 108.1.1.41 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › MTIP_N | 0.74 | 60.0 | 6.03e-01 | 97.9% | 91.7% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 63.0 | 6.28e-01 | 100.0% | 96.0% |
| 3519328 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.73 | 59.0 | 4.76e-01 | 100.0% | 46.3% |
| 3886972 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 59.0 | 5.52e-01 | 100.0% | 73.8% |
| 3209515 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 58.0 | 5.20e-01 | 100.0% | 74.7% |
| 4991136 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.70 | 58.0 | 5.53e-01 | 100.0% | 86.7% |
| 3589699 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.68 | 46.0 | 3.91e-01 | 70.8% | 52.5% |
| 5000806 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.66 | 46.0 | 3.59e-01 | 77.1% | 37.4% |
| 4968278 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.63 | 47.0 | 3.98e-01 | 83.3% | 78.8% |
| 3618272 | 103.1.1.18 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Regnase_1_C | 0.63 | 46.0 | 4.61e-01 | 100.0% | 82.0% |
| 3591354 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.62 | 51.0 | 4.89e-01 | 93.8% | 85.5% |
| 3411504 | 148.1.3.179 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_BCS1 | 0.62 | 49.0 | 4.65e-01 | 100.0% | 86.2% |
| 3986812 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 49.0 | 4.71e-01 | 97.9% | 83.3% |
| 3261028 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.60 | 44.0 | 3.73e-01 | 81.2% | 51.8% |
| 4991064 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.59 | 47.0 | 2.86e-01 | 100.0% | 12.6% |
| 3999994 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.58 | 46.0 | 4.09e-01 | 93.8% | 61.3% |
| 5073312 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.57 | 46.0 | 3.12e-01 | 100.0% | 22.6% |
| 3897956 | 198.1.1.18 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2, SapB_1, Saposin | 0.56 | 38.0 | 2.99e-01 | 72.9% | 64.3% |
| 3273781 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.55 | 42.0 | 3.59e-01 | 97.9% | 47.4% |
| 5079025 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 43.0 | 3.91e-01 | 93.8% | 81.4% |
| 3279033 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 36.0 | 3.24e-01 | 72.9% | 100.0% |
| 4397698 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.53 | 45.0 | 3.37e-01 | 95.8% | 51.7% |
| 4941193 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.53 | 43.0 | 3.74e-01 | 100.0% | 76.5% |
| 3711335 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.44e-01 | 77.1% | 19.6% |
| 3223445 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.52 | 43.0 | 3.47e-01 | 100.0% | 47.6% |
| 4028471 | 516.1.1.1 ↗ | alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 | 0.52 | 41.0 | 3.46e-01 | 97.9% | 90.0% |
| 3962282 | 3419.1.1.2 ↗ | alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA › VbhA | 0.52 | 42.0 | 4.04e-01 | 95.8% | 81.8% |
D5
medium
residues 259-284_354-456
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.53 | 29.0 | 3.40e-01 | 81.4% | 74.2% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 23.0 | 2.83e-01 | 75.2% | 60.5% |
| 4kktA01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.53 | 26.0 | 2.99e-01 | 89.1% | 60.4% |
| 1ik3A04 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 4.00e-01 | 81.4% | 91.8% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 33.0 | 3.67e-01 | 77.5% | 82.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5084009 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.80 | 38.0 | 5.57e-01 | 72.1% | 100.0% |
| 3407218 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.75 | 24.0 | 3.68e-01 | 74.4% | 67.3% |
| 4032300 | 4.1.1.59 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_5 | 0.52 | 33.0 | 3.89e-01 | 77.5% | 92.2% |
| 5686 | 211.1.1.18 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Diox-like_N | 0.52 | 26.0 | 3.18e-01 | 80.6% | 72.6% |
| 3737927 | 220.1.1.294 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 | 0.51 | 30.0 | 3.21e-01 | 78.3% | 66.4% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.50 | 36.0 | 3.65e-01 | 75.2% | 100.0% |