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NC_005964.2__YP_044804.1__phiMFV1_p17__00015

Bact-Vir

NC_005964.2__YP_044804.1__phiMFV1_p17__00015

Identity

Accession:
NC_005964 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Mycoplasma_phage_phiMFV1

TaxID: 280702

Cluster

View cluster (138 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 117-274
PDB
Domain cluster: rep: MK448963.1__QBX29522.1__Javan498_0048__00001__D46-231
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 40.0 5.00e-10 99.4% 91.3%
D2 medium residues 1-112
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 63.0 6.67e-01 89.3% 100.0%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 58.0 6.34e-01 85.7% 100.0%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 61.0 6.29e-01 86.6% 99.0%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.71 59.0 6.04e-01 89.3% 99.0%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.69 49.0 4.42e-01 72.3% 65.3%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 39.0 4.63e-01 90.2% 100.0%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 33.0 3.57e-01 78.6% 63.5%
5mswA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 32.0 3.51e-01 84.8% 66.3%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.55 42.0 4.50e-01 81.2% 100.0%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 37.0 3.98e-01 74.1% 83.5%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 40.0 3.81e-01 81.2% 81.0%
2py6A01 1.20.1270.160 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 33.0 3.88e-01 78.6% 98.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959184 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.78 62.0 6.69e-01 83.0% 100.0%
3504160 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 65.0 6.55e-01 88.4% 98.2%
4996189 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 65.0 6.76e-01 89.3% 100.0%
4667626 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 62.0 6.55e-01 83.9% 100.0%
4406227 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 66.0 6.38e-01 91.1% 100.0%
4008705 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 66.0 6.57e-01 91.1% 96.5%
2319286 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 63.0 6.62e-01 86.6% 95.1%
4487415 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 64.0 6.38e-01 88.4% 92.2%
4064194 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.77 60.0 5.86e-01 82.1% 100.0%
4220256 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 64.0 6.54e-01 90.2% 100.0%
3956495 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.76 65.0 6.60e-01 91.1% 92.7%
4396981 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 61.0 6.48e-01 85.7% 100.0%
4629318 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.75 60.0 6.24e-01 85.7% 100.0%
4063794 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 62.0 6.31e-01 88.4% 97.3%
4377812 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 58.0 6.16e-01 82.1% 100.0%
4579981 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.74 62.0 6.28e-01 89.3% 98.2%
136582 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.74 61.0 6.43e-01 89.3% 99.0%
4051052 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.74 62.0 6.25e-01 89.3% 97.3%
4216298 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.73 61.0 6.38e-01 87.5% 100.0%
3957640 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.73 61.0 6.42e-01 91.1% 100.0%
5058076 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.72 62.0 6.08e-01 91.1% 85.0%
4981576 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.72 55.0 6.11e-01 83.0% 100.0%
4172485 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.72 60.0 6.10e-01 89.3% 93.6%
4941150 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.72 61.0 5.95e-01 90.2% 88.3%
4988020 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.71 61.0 5.81e-01 91.1% 83.1%
4954639 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.67 54.0 5.53e-01 87.5% 100.0%
3657382 109.4.1.1567 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Frigida 0.53 41.0 3.67e-01 83.0% 82.5%
3716819 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.52 43.0 3.10e-01 91.1% 72.1%
D3 medium residues 309-363
PDB