←Back to structures

NC_006552.1__YP_164323.1__F116p59__00059

Bact-Vir

NC_006552.1__YP_164323.1__F116p59__00059

Identity

Accession:
NC_006552 ↗
Kingdom:
phage

Quality

64.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_F116

TaxID: 2679904

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 835-966
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00015__D313-479
D2 medium residues 58-118_132-158
PDB
D3 medium residues 159-257
PDB
D4 medium residues 1010-1089
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 6.12e-01 91.3% 98.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.91e-01 91.3% 93.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.26e-01 90.0% 79.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.37e-01 91.3% 81.7%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.87e-01 91.3% 98.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.51e-01 92.5% 100.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 55.0 4.48e-01 92.5% 87.7%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 54.0 4.40e-01 93.8% 75.2%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 53.0 4.30e-01 93.8% 82.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 54.0 4.35e-01 96.2% 94.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 55.0 3.95e-01 100.0% 57.7%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 53.0 3.95e-01 98.8% 41.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.59 48.0 4.87e-01 87.5% 94.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 38.0 4.21e-01 77.5% 86.7%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 37.0 4.23e-01 75.0% 92.6%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.86e-01 72.5% 96.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.70e-01 73.8% 91.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 4.23e-01 78.8% 90.3%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.56 39.0 3.48e-01 71.2% 82.9%
4xa2A01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.56 35.0 3.15e-01 72.5% 45.1%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.65e-01 82.5% 83.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 45.0 3.69e-01 88.7% 87.3%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.71e-01 77.5% 92.3%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 46.0 3.35e-01 95.0% 65.5%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.80e-01 78.8% 99.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.51e-01 75.0% 90.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.23e-01 73.8% 48.1%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 48.0 3.05e-01 100.0% 84.4%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.53e-01 82.5% 90.6%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.61e-01 90.0% 98.5%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 2.71e-01 80.0% 35.1%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.71e-01 73.8% 100.0%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 2.64e-01 78.8% 30.3%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.94e-01 81.2% 88.3%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.62e-01 85.0% 87.2%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.51 38.0 3.32e-01 83.7% 78.0%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.50 36.0 3.45e-01 75.0% 72.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.37e-01 95.0% 100.0%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 60.0 6.42e-01 96.2% 98.6%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 56.0 6.15e-01 93.8% 98.5%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 56.0 6.10e-01 93.8% 98.5%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.73 52.0 5.71e-01 92.5% 92.3%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 55.0 5.99e-01 90.0% 100.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.72 48.0 5.59e-01 88.7% 100.0%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 58.0 6.03e-01 96.2% 93.3%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.78e-01 91.3% 96.9%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 54.0 4.67e-01 92.5% 54.2%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 54.0 3.77e-01 93.8% 26.4%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.35e-01 83.7% 92.9%
3853596 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 59.0 5.04e-01 93.8% 86.9%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 59.0 5.11e-01 93.8% 94.2%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 51.0 4.93e-01 88.7% 70.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.35e-01 91.3% 96.7%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.11e-01 98.8% 70.8%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 52.0 4.85e-01 92.5% 66.0%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 51.0 5.05e-01 91.3% 76.5%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.71e-01 98.8% 94.4%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 50.0 4.95e-01 92.5% 75.3%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.66 58.0 4.30e-01 97.5% 98.0%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 52.0 4.63e-01 92.5% 59.1%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.51e-01 98.8% 90.5%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 56.0 4.31e-01 93.8% 60.6%
3444064 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 57.0 4.25e-01 96.2% 53.3%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 57.0 4.38e-01 96.2% 93.7%
3422227 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 56.0 3.77e-01 96.2% 27.4%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 55.0 4.39e-01 92.5% 53.5%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 47.0 4.92e-01 90.0% 83.8%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.64 57.0 4.43e-01 97.5% 81.2%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.51e-01 93.8% 95.9%
3410266 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.64 54.0 4.39e-01 91.3% 67.6%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.64 49.0 4.97e-01 92.5% 82.5%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.38e-01 91.3% 96.2%
3330137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 56.0 4.45e-01 97.5% 94.4%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 57.0 4.73e-01 100.0% 95.7%
2672307 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 54.0 4.32e-01 93.8% 70.5%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.63 54.0 3.39e-01 93.8% 26.4%
3313137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 55.0 4.38e-01 97.5% 80.6%
3173893 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 56.0 3.98e-01 100.0% 56.3%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 53.0 4.09e-01 93.8% 51.1%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 53.0 4.78e-01 93.8% 86.4%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 53.0 3.99e-01 93.8% 62.1%
None — 0.61 53.0 4.11e-01 93.8% 63.5%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 55.0 4.38e-01 100.0% 96.2%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.61 51.0 3.98e-01 92.5% 48.0%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 51.0 4.17e-01 92.5% 56.0%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 3.88e-01 93.8% 51.0%
3686225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 3.92e-01 92.5% 45.9%
3687369 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 51.0 4.76e-01 92.5% 84.0%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 3.10e-01 98.8% 9.9%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 54.0 4.35e-01 98.8% 100.0%
3720815 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 51.0 4.52e-01 92.5% 76.5%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.60 52.0 4.04e-01 93.8% 60.0%
5079413 5.1.3.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.60 44.0 3.03e-01 77.5% 28.7%
3461775 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.79e-01 83.7% 98.7%
3365669 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.58 41.0 3.75e-01 75.0% 90.0%
3672372 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 41.0 4.25e-01 73.8% 85.3%
4349149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.61e-01 90.0% 95.6%
3695717 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.40e-01 82.5% 81.2%
4646762 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.57 41.0 4.11e-01 76.2% 76.5%
3650675 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 42.0 3.81e-01 78.8% 100.0%
4296288 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.57 41.0 3.72e-01 75.0% 96.2%
790 58.1.1.1 ↗ beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.56 39.0 3.48e-01 71.2% 82.9%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 38.0 3.37e-01 71.2% 80.0%
4084495 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 41.0 3.80e-01 78.8% 98.1%
5078784 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.56 44.0 3.13e-01 87.5% 35.1%
3817752 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 40.0 4.28e-01 78.8% 91.4%
3412126 243.3.1.53 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.54 40.0 3.72e-01 78.8% 63.0%
3617446 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 37.0 3.43e-01 73.8% 68.6%
4127161 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.49e-01 75.0% 97.0%
3226149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 37.0 3.30e-01 73.8% 71.3%
3446187 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.52 39.0 3.24e-01 81.2% 44.0%
4931666 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.70e-01 90.0% 83.3%
1824182 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 38.0 3.94e-01 81.2% 88.3%
5030082 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 35.0 2.77e-01 71.2% 58.3%
D5 medium residues 1090-1243
PDB
Domain cluster: rep: IMGVR_UViG_3300026488_000006-3300026488-Ga0256838_100023139__D145-304
D6 medium residues 1244-1332
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 47.0 4.06e-01 80.9% 61.7%
1ri5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 38.0 2.79e-01 76.4% 24.2%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.58e-01 100.0% 96.1%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.44e-01 78.7% 97.5%
1dymA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.55 43.0 2.93e-01 89.9% 55.2%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.54 40.0 3.88e-01 87.6% 69.6%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 42.0 2.84e-01 86.5% 98.8%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 29.0 2.57e-01 97.8% 35.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 39.0 2.72e-01 82.0% 62.6%
3uueA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 3.02e-01 94.4% 90.0%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.50 39.0 2.87e-01 84.3% 74.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 44.0 4.30e-01 73.0% 64.2%
4000622 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.63 44.0 3.95e-01 73.0% 53.3%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 3.76e-01 73.0% 91.4%
4386702 219.1.1.45 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.62 48.0 3.36e-01 82.0% 31.4%
3880540 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.60 34.0 3.98e-01 84.3% 81.7%
3505589 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.59 41.0 3.75e-01 73.0% 56.7%
3505711 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.59 41.0 4.25e-01 73.0% 80.0%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 41.0 2.54e-01 76.4% 22.8%
4953759 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 34.0 3.87e-01 86.5% 91.7%
2635091 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 40.0 3.26e-01 79.8% 83.2%
3459823 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 39.0 2.78e-01 82.0% 46.2%
3953875 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.50 34.0 2.88e-01 74.2% 40.7%
D7 medium residues 1355-1446_1460-1492
PDB
Domain cluster: rep: NC_021798.1__YP_008241631.1__Phi17-2_gp136__00136__D1-108
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.65 41.0 4.54e-01 97.6% 78.2%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 42.0 4.92e-01 93.6% 96.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 37.0 4.63e-01 88.8% 97.3%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 43.0 4.30e-01 95.2% 73.8%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 37.0 3.78e-01 76.8% 67.8%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 32.0 3.50e-01 80.8% 67.6%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 4.14e-01 88.0% 88.7%
2qvaA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.54 38.0 3.82e-01 78.4% 69.8%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 42.0 4.42e-01 96.0% 93.6%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 31.0 3.74e-01 73.6% 90.9%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 28.0 3.51e-01 70.4% 85.1%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.53 32.0 3.77e-01 84.0% 90.1%
2z1qB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 34.0 3.38e-01 87.2% 60.3%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 29.0 3.33e-01 72.8% 74.4%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.51 38.0 3.93e-01 76.0% 83.6%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.51 37.0 3.98e-01 88.8% 88.8%
3u64A00 1.25.40.920 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component 0.51 40.0 3.16e-01 84.0% 54.2%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.51 43.0 4.06e-01 90.4% 90.5%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.50 36.0 3.57e-01 98.4% 69.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3396860 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.60 38.0 3.66e-01 88.8% 55.7%
3507458 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.59 35.0 3.97e-01 84.8% 78.9%
5068160 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.58 37.0 3.90e-01 95.2% 68.7%
3907213 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 40.0 4.48e-01 88.0% 92.0%
5064159 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.56 44.0 3.67e-01 83.2% 74.1%
5063887 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.55 42.0 3.53e-01 80.8% 72.7%
5016583 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.55 43.0 3.63e-01 83.2% 75.7%
3799907 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.55 39.0 3.92e-01 86.4% 70.8%
4930860 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.52 31.0 3.57e-01 78.4% 81.1%
3174678 633.15.1.3 ↗ alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › SOG2 0.52 38.0 3.43e-01 85.6% 55.3%
4974047 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.52 40.0 3.48e-01 84.8% 74.2%
3559003 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 28.0 3.08e-01 74.4% 63.0%
3283147 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 40.0 3.11e-01 81.6% 73.1%
3940449 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 41.0 3.79e-01 88.8% 67.5%
3496202 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 38.0 3.67e-01 88.8% 68.3%
4963908 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.50 43.0 4.20e-01 95.2% 84.6%
D8 medium residues 1567-1663
PDB
Domain cluster: rep: MK511040.1__QBI82414.1__X__00008__D521-599