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NC_006565.1__YP_164652.1__LP65_gp017__00017
Bact-VirNC_006565.1__YP_164652.1__LP65_gp017__00017
Identity
- Accession:
- NC_006565 ↗
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Salchichonvirus›
Lactobacillus_phage_LP65
TaxID: 2892344
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-76
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.67 | 48.0 | 2.81e-01 | 100.0% | 9.6% |
| 1f46B00 | 3.30.1400.10 | Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain | 0.65 | 54.0 | 3.98e-01 | 96.0% | 64.3% |
| 2h8pC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 46.0 | 4.46e-01 | 98.0% | 70.2% |
| 3s8iA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.63 | 43.0 | 3.29e-01 | 72.0% | 79.8% |
| 3iylW04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 41.0 | 2.70e-01 | 96.0% | 14.6% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.63 | 49.0 | 4.34e-01 | 88.0% | 94.7% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.63 | 53.0 | 4.91e-01 | 100.0% | 92.6% |
| 3hrdB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.61 | 49.0 | 3.61e-01 | 94.0% | 83.9% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.61 | 51.0 | 4.73e-01 | 98.0% | 97.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 45.0 | 3.64e-01 | 80.0% | 97.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.60 | 48.0 | 3.57e-01 | 96.0% | 66.2% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.60 | 43.0 | 3.38e-01 | 80.0% | 41.9% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.59 | 42.0 | 3.27e-01 | 82.0% | 33.1% |
| 2akjA01 | 3.90.480.20 | Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › | 0.59 | 49.0 | 3.25e-01 | 96.0% | 40.2% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 34.0 | 2.59e-01 | 82.0% | 27.0% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 43.0 | 4.43e-01 | 98.0% | 93.6% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.57 | 46.0 | 3.60e-01 | 96.0% | 63.4% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.57 | 44.0 | 4.22e-01 | 86.0% | 73.7% |
| 3lqyA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.56 | 43.0 | 2.86e-01 | 82.0% | 23.0% |
| 2js3A01 | 1.10.287.780 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains | 0.56 | 37.0 | 3.28e-01 | 70.0% | 43.4% |
| 1cjaA02 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.55 | 43.0 | 3.03e-01 | 98.0% | 25.4% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 46.0 | 3.23e-01 | 98.0% | 67.0% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.55 | 47.0 | 3.92e-01 | 98.0% | 85.2% |
| 2f2hA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 46.0 | 2.77e-01 | 98.0% | 28.8% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.54 | 43.0 | 4.22e-01 | 92.0% | 92.6% |
| 2hg7A00 | 3.30.56.60 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like | 0.52 | 42.0 | 3.99e-01 | 92.0% | 96.7% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 34.0 | 3.33e-01 | 74.0% | 61.8% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.51 | 40.0 | 3.08e-01 | 94.0% | 54.3% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 2.97e-01 | 90.0% | 74.6% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614452 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.73 | 52.0 | 4.29e-01 | 82.0% | 42.2% |
| 5017154 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.73 | 62.0 | 4.51e-01 | 94.0% | 65.9% |
| 3711067 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.72 | 51.0 | 4.04e-01 | 82.0% | 36.2% |
| 3733718 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.72 | 62.0 | 5.29e-01 | 100.0% | 77.6% |
| 4462675 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.70 | 60.0 | 4.88e-01 | 100.0% | 77.6% |
| 4078006 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.68 | 58.0 | 4.63e-01 | 98.0% | 70.5% |
| 3222006 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.68 | 58.0 | 4.61e-01 | 96.0% | 69.0% |
| 3593362 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.67 | 50.0 | 4.25e-01 | 88.0% | 48.2% |
| 3656952 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 50.0 | 3.94e-01 | 88.0% | 37.4% |
| 3743635 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.65 | 47.0 | 4.02e-01 | 82.0% | 47.5% |
| 3260511 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.65 | 50.0 | 4.86e-01 | 90.0% | 78.2% |
| 3359774 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.64 | 52.0 | 4.29e-01 | 100.0% | 72.4% |
| 4446838 | 7587.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P | 0.64 | 45.0 | 3.46e-01 | 76.0% | 38.7% |
| 3497542 | 626.1.1.1 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 | 0.63 | 45.0 | 2.71e-01 | 78.0% | 12.8% |
| 3935794 | 1.1.1.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease | 0.63 | 42.0 | 3.10e-01 | 72.0% | 71.0% |
| 3580309 | 376.1.1.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 | 0.62 | 52.0 | 4.13e-01 | 92.0% | 50.0% |
| 4946992 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.62 | 44.0 | 3.12e-01 | 98.0% | 22.5% |
| 3537747 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.62 | 48.0 | 4.66e-01 | 90.0% | 78.2% |
| 3254236 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.62 | 51.0 | 4.04e-01 | 94.0% | 47.6% |
| 4928463 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.61 | 51.0 | 3.55e-01 | 96.0% | 52.3% |
| 3314358 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.60 | 45.0 | 3.80e-01 | 82.0% | 51.8% |
| 5072409 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.60 | 42.0 | 2.84e-01 | 98.0% | 20.6% |
| 4436313 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 47.0 | 3.95e-01 | 90.0% | 86.7% |
| 3693747 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.59 | 44.0 | 3.73e-01 | 82.0% | 47.1% |
| 3506058 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 51.0 | 4.06e-01 | 96.0% | 53.0% |
| 3211940 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.58 | 48.0 | 3.51e-01 | 100.0% | 69.0% |
| 4016231 | 2006.1.1.24 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › LNS2 | 0.58 | 48.0 | 3.28e-01 | 100.0% | 72.2% |
| 3208696 | 109.4.1.2122 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C2 | 0.58 | 41.0 | 2.30e-01 | 88.0% | 6.4% |
| 3639718 | 109.4.1.862 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 | 0.57 | 41.0 | 2.30e-01 | 88.0% | 6.3% |
| 3735247 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.57 | 51.0 | 3.48e-01 | 100.0% | 40.6% |
| 3174371 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 44.0 | 2.89e-01 | 88.0% | 78.3% |
| 3619018 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 46.0 | 4.35e-01 | 90.0% | 90.0% |
| 3628498 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 49.0 | 4.43e-01 | 100.0% | 80.0% |
| 3242948 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.57 | 41.0 | 2.71e-01 | 90.0% | 17.3% |
| 3492997 | 5046.1.1.196 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › PF30981, PF30982 | 0.57 | 46.0 | 2.72e-01 | 94.0% | 11.9% |
| 5025131 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.57 | 50.0 | 3.58e-01 | 100.0% | 82.7% |
| 3764423 | 102.1.3.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C | 0.57 | 50.0 | 3.74e-01 | 100.0% | 88.8% |
| 3503411 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 41.0 | 4.28e-01 | 80.0% | 88.9% |
| 3935829 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.56 | 48.0 | 4.61e-01 | 100.0% | 86.4% |
| 4937466 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.56 | 47.0 | 4.31e-01 | 100.0% | 71.4% |
| 3389846 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 43.0 | 3.98e-01 | 90.0% | 66.2% |
| 3794324 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 47.0 | 4.28e-01 | 100.0% | 81.4% |
| 3742863 | 4205.1.1.3 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 | 0.55 | 48.0 | 3.14e-01 | 100.0% | 22.7% |
| 3397452 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.55 | 46.0 | 4.40e-01 | 98.0% | 90.0% |
| 3882068 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.55 | 46.0 | 4.66e-01 | 98.0% | 100.0% |
| 4965674 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 4.13e-01 | 92.0% | 98.0% |
| 4011423 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 3.76e-01 | 94.0% | 64.0% |
| 4087126 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.53 | 42.0 | 3.77e-01 | 96.0% | 83.7% |
| 4001939 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 43.0 | 3.99e-01 | 100.0% | 81.4% |
| 3733413 | 3343.1.1.1 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal | 0.52 | 43.0 | 2.44e-01 | 96.0% | 14.0% |
| 5024500 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.52 | 45.0 | 3.58e-01 | 98.0% | 65.7% |
| 4662124 | 2498.1.1.141 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M11 | 0.51 | 45.0 | 2.75e-01 | 98.0% | 33.5% |
| 3940459 | 2003.1.5.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase | 0.51 | 41.0 | 2.56e-01 | 100.0% | 70.0% |
| 3821144 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.51 | 41.0 | 2.34e-01 | 98.0% | 14.5% |
| 3965196 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.50 | 40.0 | 3.80e-01 | 88.0% | 78.3% |
| 184680 | 6032.1.1.1 ↗ | a+b two layers › DUF3222-like › DUF3222-like › DUF3222-like › DUF3222 | 0.50 | 33.0 | 2.75e-01 | 72.0% | 34.4% |
| 3719561 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.50 | 42.0 | 2.69e-01 | 100.0% | 17.9% |