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NC_006565.1__YP_164670.1__LP65_gp035__00035
Bact-VirNC_006565.1__YP_164670.1__LP65_gp035__00035
Identity
- Accession:
- NC_006565 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Salchichonvirus›
Lactobacillus_phage_LP65
TaxID: 2892344
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-89
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ue3A02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.63 | 51.0 | 4.29e-01 | 89.0% | 95.8% |
| 3eqvA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 51.0 | 4.35e-01 | 89.0% | 95.5% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 45.0 | 4.11e-01 | 75.6% | 58.7% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 46.0 | 4.15e-01 | 85.4% | 99.2% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 42.0 | 4.10e-01 | 100.0% | 66.0% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.59 | 36.0 | 3.98e-01 | 74.4% | 79.4% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 3.36e-01 | 76.8% | 52.3% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 42.0 | 3.72e-01 | 76.8% | 53.7% |
| 1skoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.58 | 43.0 | 3.83e-01 | 79.3% | 97.4% |
| 1x5zA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 33.0 | 3.10e-01 | 76.8% | 41.9% |
| 6kghA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 46.0 | 3.75e-01 | 87.8% | 90.9% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.29e-01 | 87.8% | 65.0% |
| 6g9sA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 39.0 | 2.69e-01 | 73.2% | 99.4% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 51.0 | 3.94e-01 | 98.8% | 88.2% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 41.0 | 3.74e-01 | 75.6% | 98.1% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 40.0 | 3.84e-01 | 73.2% | 96.7% |
| 2jbmD01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.56 | 49.0 | 4.16e-01 | 98.8% | 98.6% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.55 | 34.0 | 3.24e-01 | 76.8% | 48.6% |
| 1o6uA02 | 2.60.120.680 | Mainly Beta › Sandwich › Jelly Rolls › GOLD domain | 0.54 | 35.0 | 3.25e-01 | 75.6% | 50.0% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 3.49e-01 | 75.6% | 59.6% |
| 5huoE01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.54 | 47.0 | 4.00e-01 | 100.0% | 63.3% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 41.0 | 3.66e-01 | 84.1% | 98.3% |
| 2kl5A00 | 3.50.4.20 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 | 0.53 | 35.0 | 3.25e-01 | 81.7% | 51.8% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.53 | 42.0 | 3.10e-01 | 87.8% | 84.0% |
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.24e-01 | 96.3% | 58.2% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 36.0 | 3.58e-01 | 73.2% | 92.9% |
| 5eo9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.20e-01 | 75.6% | 54.2% |
| 2z6cA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 3.31e-01 | 78.0% | 89.3% |
| 8bxrA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.51e-01 | 96.3% | 70.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593924 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.63 | 46.0 | 4.05e-01 | 76.8% | 53.3% |
| 3739712 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.63 | 49.0 | 4.26e-01 | 85.4% | 94.6% |
| 3955717 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.61 | 44.0 | 3.89e-01 | 76.8% | 52.8% |
| 3794632 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.60 | 47.0 | 3.89e-01 | 85.4% | 90.5% |
| 3628891 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 50.0 | 4.38e-01 | 95.1% | 61.6% |
| 5003158 | 2.5.1.1 ↗ | beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase | 0.59 | 50.0 | 4.40e-01 | 98.8% | 81.5% |
| 3535170 | 11.1.1.663 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_N | 0.59 | 37.0 | 3.50e-01 | 76.8% | 51.0% |
| 3400015 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.58 | 45.0 | 3.97e-01 | 86.6% | 94.6% |
| 4948155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 46.0 | 3.98e-01 | 86.6% | 93.8% |
| 3722450 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.58 | 45.0 | 3.81e-01 | 85.4% | 94.5% |
| 3858274 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.58 | 34.0 | 3.24e-01 | 75.6% | 44.8% |
| 3702373 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 32.0 | 3.20e-01 | 75.6% | 47.8% |
| 5062347 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 34.0 | 3.57e-01 | 75.6% | 64.0% |
| 5079770 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 42.0 | 3.73e-01 | 79.3% | 95.0% |
| 3887913 | 223.2.1.40 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN | 0.55 | 41.0 | 3.45e-01 | 82.9% | 65.8% |
| 3603559 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.55 | 38.0 | 3.43e-01 | 72.0% | 67.3% |
| 4977323 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 42.0 | 3.68e-01 | 82.9% | 80.0% |
| 3193904 | 221.1.1.93 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 | 0.54 | 36.0 | 3.16e-01 | 76.8% | 43.8% |
| 4058527 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.54 | 38.0 | 3.73e-01 | 76.8% | 69.5% |
| 3256878 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 42.0 | 3.51e-01 | 85.4% | 64.1% |
| 3519553 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 36.0 | 3.23e-01 | 75.6% | 49.6% |
| 4975418 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 41.0 | 3.67e-01 | 84.1% | 99.2% |
| 4018561 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.53 | 40.0 | 3.44e-01 | 84.1% | 98.6% |
| 4946284 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 40.0 | 3.59e-01 | 84.1% | 76.0% |
| 3863267 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 36.0 | 3.38e-01 | 96.3% | 58.0% |
| 4002901 | 223.2.1.12 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int | 0.52 | 42.0 | 3.57e-01 | 89.0% | 85.7% |
| 3216926 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.11e-01 | 78.0% | 41.3% |
| 3785564 | 10.32.1.244 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 | 0.52 | 37.0 | 3.32e-01 | 75.6% | 70.8% |
| 3516524 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.52 | 44.0 | 3.71e-01 | 95.1% | 55.2% |
| 3265738 | 223.2.1.12 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int | 0.52 | 39.0 | 3.52e-01 | 84.1% | 98.4% |
| 3203509 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.52 | 37.0 | 3.25e-01 | 75.6% | 74.4% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.51 | 44.0 | 3.57e-01 | 98.8% | 60.0% |
| 3389592 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.51 | 36.0 | 3.33e-01 | 73.2% | 74.0% |
| 5050910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 39.0 | 3.57e-01 | 85.4% | 100.0% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.50 | 36.0 | 2.98e-01 | 75.6% | 74.0% |
| 4983643 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.50 | 39.0 | 3.64e-01 | 86.6% | 65.7% |
| 4962205 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.50 | 43.0 | 3.80e-01 | 100.0% | 66.1% |