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NC_006820.1__YP_195040.1__S-PM2p006__00006

Bact-Vir

NC_006820.1__YP_195040.1__S-PM2p006__00006

Identity

Accession:
NC_006820 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Nodensvirus› Synechococcus_phage_S-PM2

TaxID: 238854

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
Domain cluster: rep: KY229234__AQQ75471.1__JdFRA1000001-38c__00038__D1-62
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.81 58.0 6.40e-01 83.6% 96.2%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.79 54.0 5.26e-01 73.1% 64.0%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.77 53.0 5.84e-01 77.6% 92.5%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.76 58.0 6.22e-01 92.5% 94.7%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 38.0 2.94e-01 70.1% 51.6%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 40.0 3.40e-01 83.6% 74.4%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 34.0 2.58e-01 70.1% 99.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.45e-01 77.6% 88.0%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004764 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.92 60.0 7.19e-01 73.1% 100.0%
4967269 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.90 60.0 6.54e-01 74.6% 83.6%
5065699 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.89 57.0 6.79e-01 71.6% 97.8%
5031362 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.89 62.0 6.59e-01 80.6% 81.7%
5081177 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.88 56.0 6.72e-01 71.6% 97.8%
3984485 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.88 63.0 5.91e-01 76.1% 62.5%
5065458 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.88 55.0 5.84e-01 70.1% 71.7%
5071519 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.88 58.0 5.96e-01 73.1% 70.8%
5029188 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.88 60.0 6.60e-01 77.6% 87.3%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.87 60.0 6.59e-01 77.6% 87.3%
5050062 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.87 61.0 6.44e-01 80.6% 81.7%
4993713 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.87 60.0 6.56e-01 77.6% 87.3%
4929551 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.87 61.0 6.25e-01 76.1% 75.4%
4639978 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 56.0 6.14e-01 73.1% 81.8%
5072446 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.86 58.0 6.13e-01 76.1% 78.3%
4005331 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 60.0 6.83e-01 74.6% 98.0%
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.86 59.0 5.84e-01 77.6% 68.6%
5001623 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.85 60.0 6.74e-01 73.1% 98.0%
4992635 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 59.0 6.79e-01 74.6% 100.0%
4993826 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 58.0 6.67e-01 73.1% 100.0%
4955487 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.85 55.0 6.49e-01 73.1% 100.0%
5076168 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.85 55.0 5.07e-01 73.1% 52.9%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.84 57.0 6.18e-01 70.1% 100.0%
5032072 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 57.0 6.16e-01 76.1% 85.5%
5012674 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 57.0 5.61e-01 74.6% 67.1%
4085449 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.84 58.0 5.65e-01 74.6% 65.3%
5074248 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.83 56.0 6.14e-01 74.6% 85.5%
5029523 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.83 56.0 6.45e-01 70.1% 100.0%
4955560 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 55.0 6.02e-01 74.6% 83.6%
5001967 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 59.0 6.69e-01 74.6% 100.0%
5030593 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 54.0 5.88e-01 73.1% 81.8%
5030713 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 57.0 5.82e-01 76.1% 73.8%
4933873 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.83 56.0 6.10e-01 70.1% 85.5%
4966249 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 54.0 6.29e-01 71.6% 100.0%
5014382 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.82 54.0 5.24e-01 74.6% 61.3%
5031215 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.81 53.0 5.79e-01 71.6% 81.8%
4534384 1.1.3.4 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin 0.81 56.0 6.12e-01 71.6% 98.1%
4994020 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.81 55.0 5.87e-01 71.6% 81.0%
5027264 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 53.0 5.26e-01 73.1% 64.3%
3588700 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.81 57.0 5.41e-01 74.6% 66.3%
4992345 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.81 53.0 6.10e-01 73.1% 100.0%
4967811 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 56.0 5.90e-01 77.6% 81.7%
4941025 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.80 56.0 6.33e-01 77.6% 100.0%
4958102 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.80 58.0 5.94e-01 76.1% 83.1%
4966339 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.80 55.0 5.76e-01 76.1% 80.0%
5078945 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.79 56.0 5.76e-01 82.1% 76.9%
1104928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.79 54.0 5.26e-01 73.1% 64.0%
4993775 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 53.0 5.75e-01 73.1% 85.5%
4947224 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.78 55.0 6.11e-01 73.1% 100.0%
5079669 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 51.0 5.57e-01 73.1% 81.8%
5027694 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.78 54.0 5.92e-01 71.6% 98.1%
5078891 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 55.0 5.91e-01 73.1% 100.0%
3953985 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 51.0 5.91e-01 73.1% 100.0%
4992541 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 57.0 5.81e-01 77.6% 87.7%
4930879 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.78 55.0 6.12e-01 74.6% 100.0%
5070516 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.78 55.0 5.76e-01 77.6% 83.3%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.77 54.0 5.73e-01 80.6% 86.2%
5080671 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 56.0 5.55e-01 77.6% 74.3%
5032296 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 52.0 5.62e-01 76.1% 85.5%
5010299 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 52.0 5.77e-01 71.6% 100.0%
4967853 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 52.0 5.62e-01 74.6% 87.3%
5074387 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 56.0 6.17e-01 77.6% 100.0%
4934807 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.76 51.0 4.99e-01 74.6% 62.7%
5059110 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.75 49.0 5.61e-01 71.6% 100.0%
5059683 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.75 51.0 5.68e-01 76.1% 96.0%
5032176 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.74 55.0 5.73e-01 83.6% 88.3%
4991794 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.73 52.0 5.73e-01 74.6% 100.0%
5073758 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.73 47.0 5.32e-01 73.1% 97.8%
4967502 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.72 47.0 5.26e-01 74.6% 100.0%
5058860 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.70 48.0 5.17e-01 71.6% 85.5%
4973288 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.66 49.0 5.29e-01 79.1% 100.0%
4992628 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.64 42.0 4.55e-01 73.1% 83.6%
3439924 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.62 43.0 4.75e-01 73.1% 100.0%
3306957 1.1.3.7 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › DUF7271 0.57 42.0 4.34e-01 80.6% 93.3%
4973203 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 38.0 4.12e-01 71.6% 100.0%
3711293 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.84e-01 71.6% 84.6%
3419693 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 36.0 2.66e-01 74.6% 55.4%