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NC_006820.1__YP_195203.1__S-PM2p170__00173
Bact-VirNC_006820.1__YP_195203.1__S-PM2p170__00173
Identity
- Accession:
- NC_006820 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 116-278
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00271__D25-165
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.79 | 69.0 | 7.21e-01 | 100.0% | 98.7% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.77 | 48.0 | 5.18e-01 | 84.7% | 72.7% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.77 | 61.0 | 6.23e-01 | 100.0% | 85.8% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.75 | 72.0 | 7.04e-01 | 100.0% | 94.2% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.74 | 65.0 | 6.67e-01 | 100.0% | 95.5% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.74 | 63.0 | 6.56e-01 | 100.0% | 97.3% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.73 | 54.0 | 5.91e-01 | 90.8% | 91.7% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.72 | 68.0 | 6.57e-01 | 100.0% | 94.0% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.67 | 64.0 | 5.77e-01 | 100.0% | 96.2% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 48.0 | 4.79e-01 | 98.8% | 72.3% |
| 2lhfA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.65 | 62.0 | 5.99e-01 | 100.0% | 97.8% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.65 | 47.0 | 5.14e-01 | 92.6% | 91.6% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.61 | 57.0 | 4.54e-01 | 100.0% | 86.4% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.61 | 56.0 | 4.71e-01 | 100.0% | 99.3% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.59 | 55.0 | 4.72e-01 | 100.0% | 96.8% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 4.03e-01 | 74.2% | 87.6% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.58 | 54.0 | 3.94e-01 | 100.0% | 92.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 4.15e-01 | 74.8% | 96.6% |
| 3e4wA02 | 2.40.180.10 | Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain | 0.57 | 53.0 | 4.89e-01 | 100.0% | 87.4% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 4.52e-01 | 85.9% | 92.2% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.56 | 51.0 | 4.28e-01 | 100.0% | 86.0% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.56 | 51.0 | 4.17e-01 | 100.0% | 85.8% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.55 | 46.0 | 3.65e-01 | 94.5% | 46.4% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.55 | 49.0 | 3.98e-01 | 98.2% | 87.9% |
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.54 | 43.0 | 3.36e-01 | 84.0% | 60.7% |
| 4c4vB02 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.54 | 48.0 | 3.72e-01 | 97.5% | 63.6% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 44.0 | 3.01e-01 | 93.3% | 88.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.51 | 48.0 | 4.15e-01 | 100.0% | 80.6% |
| 6i7sG01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.51 | 47.0 | 4.04e-01 | 100.0% | 91.0% |
| 2f1cX00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.51 | 48.0 | 4.09e-01 | 100.0% | 86.5% |
| 1e54A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 47.0 | 3.67e-01 | 99.4% | 97.6% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.50 | 46.0 | 4.03e-01 | 100.0% | 94.8% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.50 | 47.0 | 3.43e-01 | 99.4% | 98.1% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4552003 | 5084.1.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW | 0.78 | 74.0 | 6.75e-01 | 100.0% | 91.4% |
| 4116729 | 5084.1.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF | 0.78 | 69.0 | 6.84e-01 | 100.0% | 88.8% |
| 4279299 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.77 | 74.0 | 7.11e-01 | 100.0% | 96.7% |
| 3839724 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.76 | 73.0 | 6.35e-01 | 100.0% | 97.0% |
| 4285298 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.76 | 73.0 | 6.87e-01 | 100.0% | 94.2% |
| 4197411 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.76 | 73.0 | 6.72e-01 | 100.0% | 92.5% |
| 4042627 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.76 | 73.0 | 7.24e-01 | 100.0% | 97.6% |
| 3838975 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.76 | 72.0 | 6.89e-01 | 100.0% | 95.1% |
| 3838398 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.75 | 71.0 | 6.85e-01 | 100.0% | 89.4% |
| 3839188 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.75 | 71.0 | 6.21e-01 | 100.0% | 94.9% |
| 3839690 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.75 | 71.0 | 6.63e-01 | 99.4% | 98.5% |
| 3964096 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.74 | 65.0 | 6.38e-01 | 100.0% | 85.1% |
| None | — | 0.74 | 63.0 | 6.56e-01 | 100.0% | 97.3% | |
| 3164538 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.74 | 71.0 | 6.60e-01 | 100.0% | 94.9% |
| 4130771 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.74 | 70.0 | 6.73e-01 | 100.0% | 89.2% |
| 4417262 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.74 | 68.0 | 6.82e-01 | 100.0% | 95.2% |
| 4283551 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.74 | 70.0 | 6.38e-01 | 100.0% | 85.7% |
| 4174055 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.72 | 69.0 | 6.59e-01 | 100.0% | 96.7% |
| 4464084 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.72 | 68.0 | 6.17e-01 | 100.0% | 95.8% |
| 4636309 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.72 | 68.0 | 6.14e-01 | 100.0% | 99.1% |
| 3970312 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.69 | 65.0 | 6.32e-01 | 100.0% | 96.7% |
| 4234836 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 58.0 | 4.62e-01 | 100.0% | 84.6% |
| 4669999 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.61 | 57.0 | 4.57e-01 | 100.0% | 84.9% |
| 3969681 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.61 | 56.0 | 4.57e-01 | 100.0% | 87.8% |
| 4437932 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.59 | 56.0 | 4.34e-01 | 100.0% | 80.3% |
| 3979319 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.59 | 54.0 | 4.46e-01 | 100.0% | 86.3% |
| 139764 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.59 | 55.0 | 4.55e-01 | 100.0% | 84.2% |
| 4547630 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.58 | 51.0 | 4.17e-01 | 92.6% | 95.2% |
| 3254506 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.58 | 54.0 | 5.46e-01 | 100.0% | 98.2% |
| 3980865 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.58 | 53.0 | 4.52e-01 | 100.0% | 90.7% |
| 4278291 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.58 | 54.0 | 4.31e-01 | 100.0% | 87.5% |
| 3973062 | 5084.5.4.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein | 0.58 | 54.0 | 3.99e-01 | 100.0% | 97.2% |
| 3164364 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 53.0 | 4.38e-01 | 100.0% | 83.7% |
| 3964572 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 53.0 | 4.32e-01 | 100.0% | 82.9% |
| 3971932 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.57 | 53.0 | 3.49e-01 | 100.0% | 44.0% |
| 4377115 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.56 | 52.0 | 3.15e-01 | 100.0% | 24.3% |
| 4200093 | 5084.5.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_O_P | 0.56 | 52.0 | 3.89e-01 | 100.0% | 92.7% |
| 4508983 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.56 | 47.0 | 3.46e-01 | 90.2% | 60.2% |
| 4008544 | 5084.6.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx | 0.55 | 51.0 | 4.56e-01 | 100.0% | 99.1% |
| 4184524 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.55 | 47.0 | 3.66e-01 | 90.2% | 63.2% |
| 3971211 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.55 | 50.0 | 3.70e-01 | 98.8% | 92.4% |
| 4480962 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.54 | 49.0 | 4.04e-01 | 100.0% | 90.7% |
| 3465157 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.54 | 48.0 | 3.73e-01 | 97.5% | 54.2% |
| 4522601 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.53 | 41.0 | 3.17e-01 | 80.4% | 39.2% |
| 3963279 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.52 | 47.0 | 3.81e-01 | 98.2% | 87.9% |
| 3937383 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 48.0 | 4.44e-01 | 100.0% | 93.8% |
| 3980921 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.52 | 47.0 | 3.69e-01 | 96.9% | 65.6% |
| 4582939 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.52 | 48.0 | 3.83e-01 | 100.0% | 93.5% |
| 1558583 | 5084.5.4.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › CymA | 0.52 | 47.0 | 3.81e-01 | 100.0% | 94.6% |
| 4662377 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.51 | 47.0 | 3.83e-01 | 98.2% | 75.5% |
| 890 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.51 | 47.0 | 3.70e-01 | 99.4% | 97.9% |
| 3981236 | 5084.5.4.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 | 0.50 | 45.0 | 3.77e-01 | 98.8% | 91.4% |
D2
medium
residues 33-78
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00395.26 best | SLH | 23.2 | 7.40e-05 | 73.9% | 59.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.63 | 48.0 | 4.34e-01 | 89.1% | 60.0% |
| 1s2gB00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 3.42e-01 | 100.0% | 38.9% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.80e-01 | 100.0% | 26.4% |
| 2awnC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.87e-01 | 100.0% | 30.8% |