←Back to structures
NC_006820.1__YP_195265.1__S-PM2p232__00235
Bact-VirNC_006820.1__YP_195265.1__S-PM2p232__00235
Identity
- Accession:
- NC_006820 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-295
Domain cluster:
rep: NC_020837.1__YP_007672976.1__SXBG_00061__00061__D1-204_291-329
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 31.0 | 4.55e-01 | 98.3% | 92.7% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 31.0 | 4.38e-01 | 88.7% | 95.0% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 16.0 | 2.53e-01 | 99.3% | 52.4% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 27.0 | 4.15e-01 | 96.6% | 99.2% |
| 2cyeC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 16.0 | 2.48e-01 | 99.7% | 53.0% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 20.0 | 3.19e-01 | 98.6% | 88.6% |
| 3g3sA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 25.0 | 3.52e-01 | 95.2% | 96.2% |
| 6wqbA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 25.0 | 3.47e-01 | 94.2% | 92.9% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 18.0 | 2.71e-01 | 94.2% | 71.3% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 29.0 | 3.51e-01 | 98.3% | 85.3% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.50 | 23.0 | 3.24e-01 | 90.1% | 86.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 852 | 9.1.1.29 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C | 0.68 | 31.0 | 4.55e-01 | 98.3% | 92.7% |
| 3060391 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.61 | 25.0 | 3.91e-01 | 98.3% | 93.0% |
| 5049480 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 25.0 | 3.41e-01 | 94.2% | 87.6% |
| 3330108 | 9.1.1.10 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE | 0.52 | 28.0 | 3.45e-01 | 97.6% | 80.0% |
| 4981130 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 23.0 | 2.94e-01 | 72.9% | 70.3% |
| 3278123 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 24.0 | 3.45e-01 | 87.3% | 94.8% |
| 3510841 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.51 | 29.0 | 3.67e-01 | 97.6% | 92.6% |