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NC_006882.2__YP_214184.1__PSSP7_006__00006

Bact-Vir

NC_006882.2__YP_214184.1__PSSP7_006__00006

Identity

Accession:
NC_006882 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Tiamatvirus› Prochlorococcus_phage_P-SSP7

TaxID: 2908095

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.82 58.0 4.28e-01 74.1% 65.4%
1xf1A01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.82 64.0 3.82e-01 83.3% 19.9%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 62.0 4.20e-01 100.0% 23.8%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.81 71.0 5.65e-01 96.3% 60.2%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.72 59.0 5.27e-01 94.4% 65.0%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.72 46.0 4.28e-01 90.7% 51.5%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.70 58.0 5.58e-01 88.9% 96.7%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.70 63.0 5.09e-01 100.0% 60.4%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.69 56.0 3.48e-01 88.9% 21.0%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 53.0 5.56e-01 100.0% 100.0%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.69 53.0 5.04e-01 83.3% 70.3%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 52.0 5.52e-01 100.0% 97.8%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 62.0 5.26e-01 100.0% 73.3%
1otrA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 51.0 5.26e-01 96.3% 87.8%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 58.0 4.27e-01 100.0% 49.7%
2qz4A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 56.0 5.20e-01 96.3% 82.6%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 60.0 4.67e-01 100.0% 56.2%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.52e-01 72.2% 81.8%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 49.0 3.66e-01 81.5% 36.8%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 4.69e-01 70.4% 97.8%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.65 54.0 4.50e-01 96.3% 51.5%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 45.0 5.03e-01 92.6% 100.0%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 57.0 4.88e-01 100.0% 68.2%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 48.0 3.13e-01 83.3% 17.0%
3k9dA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.64 44.0 2.89e-01 72.2% 56.5%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 4.06e-01 100.0% 88.1%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 53.0 3.25e-01 98.1% 15.6%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 53.0 3.84e-01 100.0% 78.4%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.61 51.0 4.11e-01 96.3% 58.3%
2qcuA03 1.10.8.870 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain 0.60 52.0 4.77e-01 98.1% 84.5%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.60 46.0 4.58e-01 88.9% 89.1%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 41.0 3.46e-01 85.2% 41.0%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 44.0 3.45e-01 85.2% 88.5%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 2.89e-01 75.9% 78.0%
3f6tA02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.58 40.0 2.99e-01 74.1% 55.8%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.57 45.0 3.44e-01 88.9% 91.3%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.56 38.0 3.70e-01 74.1% 80.0%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.98e-01 79.6% 89.7%
2ko6A00 1.10.1580.20 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040 0.56 42.0 3.65e-01 83.3% 64.0%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 45.0 3.55e-01 96.3% 50.0%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.26e-01 74.1% 49.5%
3tndA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.54 46.0 3.56e-01 100.0% 44.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404381 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.87 59.0 6.40e-01 70.4% 88.9%
3260615 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.87 67.0 5.65e-01 81.5% 67.1%
4061431 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.86 58.0 6.06e-01 70.4% 84.0%
4929712 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.83 73.0 4.71e-01 94.4% 81.8%
3838879 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 61.0 4.34e-01 100.0% 27.5%
3587822 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.80 56.0 4.14e-01 74.1% 66.2%
3970007 3502.1.1.0 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.78 57.0 5.03e-01 77.8% 54.7%
3742957 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.78 58.0 5.62e-01 79.6% 90.0%
3706047 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 59.0 5.92e-01 92.6% 80.0%
3715528 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.75 59.0 4.66e-01 83.3% 51.4%
3935012 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.73 56.0 3.43e-01 81.5% 18.3%
3572021 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.73 49.0 4.68e-01 70.4% 64.6%
4040783 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 54.0 5.45e-01 83.3% 87.3%
4302906 148.1.3.179 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_BCS1 0.72 63.0 6.14e-01 98.1% 96.7%
3870903 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.72 60.0 5.86e-01 98.1% 93.3%
4939455 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.71 59.0 5.80e-01 100.0% 91.7%
4665959 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 57.0 5.63e-01 98.1% 98.3%
3960407 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 55.0 4.09e-01 87.0% 49.6%
3411899 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.69 52.0 3.26e-01 81.5% 18.2%
3275054 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.68 55.0 4.98e-01 92.6% 70.7%
3281267 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 3.90e-01 94.4% 34.7%
3416310 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.67 56.0 5.18e-01 100.0% 94.7%
4024642 185.2.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › PfEMP1 core intracellular domain › PfEMP1 core intracellular domain › ATS 0.66 55.0 5.54e-01 100.0% 100.0%
3251424 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.66 54.0 4.98e-01 96.3% 68.9%
3703373 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 54.0 3.61e-01 94.4% 27.6%
4969656 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.64 56.0 4.25e-01 100.0% 41.1%
3471257 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 43.0 3.56e-01 72.2% 37.3%
4938127 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.63 52.0 3.69e-01 100.0% 67.7%
5031345 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.62 53.0 3.99e-01 100.0% 40.0%
2833148 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 50.0 4.11e-01 100.0% 67.0%
3607808 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 50.0 3.89e-01 96.3% 65.2%
3271607 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 3.08e-01 83.3% 35.3%
2858351 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.61 50.0 4.07e-01 100.0% 66.4%
3269970 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.59 49.0 4.10e-01 100.0% 70.5%
2557383 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 48.0 3.90e-01 100.0% 59.3%
3484896 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.59 47.0 4.20e-01 94.4% 61.2%
3710051 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 48.0 4.68e-01 94.4% 86.7%
4210808 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.57 43.0 4.14e-01 83.3% 75.4%
3767264 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 37.0 2.99e-01 72.2% 35.0%