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NC_006883.2__YP_214252.1__PSSM2_020__00016

Bact-Vir

NC_006883.2__YP_214252.1__PSSM2_020__00016

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-60
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.72 64.0 5.40e-01 100.0% 73.2%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 62.0 4.46e-01 100.0% 37.2%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 49.0 3.21e-01 78.0% 41.8%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 50.0 4.12e-01 100.0% 44.8%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.21e-01 88.0% 82.4%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 3.70e-01 90.0% 60.5%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.63 50.0 3.87e-01 100.0% 38.1%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.24e-01 100.0% 33.3%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.31e-01 100.0% 39.6%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.62 52.0 3.27e-01 100.0% 96.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 54.0 4.16e-01 100.0% 57.9%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 50.0 3.21e-01 100.0% 39.7%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 50.0 3.25e-01 92.0% 84.7%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 49.0 3.16e-01 90.0% 84.3%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 38.0 3.86e-01 70.0% 63.3%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 43.0 2.84e-01 78.0% 41.1%
2gu1A02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.16e-01 100.0% 88.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 3.66e-01 100.0% 50.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.46e-01 96.0% 86.4%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 49.0 3.03e-01 98.0% 46.3%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.75e-01 100.0% 92.6%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 45.0 2.85e-01 100.0% 27.0%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.57 48.0 2.94e-01 100.0% 22.1%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 47.0 3.16e-01 100.0% 45.5%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.84e-01 100.0% 33.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.53e-01 90.0% 42.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 4.00e-01 100.0% 85.7%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.55 42.0 3.39e-01 100.0% 80.1%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.55 46.0 3.64e-01 96.0% 47.7%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 36.0 2.91e-01 70.0% 32.7%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.75e-01 92.0% 65.1%
6muwN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 46.0 3.07e-01 100.0% 52.2%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.01e-01 98.0% 74.6%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.54 46.0 3.41e-01 100.0% 52.1%
1p0hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 2.90e-01 100.0% 98.3%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 43.0 2.77e-01 94.0% 17.5%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 42.0 2.89e-01 90.0% 97.0%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.64e-01 100.0% 23.8%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.53e-01 82.0% 59.1%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.06e-01 100.0% 50.0%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 44.0 2.97e-01 100.0% 45.7%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 44.0 2.93e-01 100.0% 44.9%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.46e-01 96.0% 83.7%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.35e-01 96.0% 60.6%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 43.0 3.21e-01 100.0% 72.1%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044594 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.70 56.0 4.65e-01 90.0% 56.7%
3191231 210.1.1.3 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.69 51.0 3.28e-01 80.0% 82.1%
2048263 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.68 61.0 4.28e-01 100.0% 59.9%
3908924 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.67 49.0 3.12e-01 80.0% 73.3%
3945792 3953.1.1.2 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.67 53.0 4.26e-01 90.0% 77.1%
4167904 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.66 50.0 3.27e-01 82.0% 92.2%
847 9.1.1.20 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3255 0.65 50.0 3.81e-01 100.0% 34.1%
4025727 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 51.0 3.81e-01 90.0% 87.1%
3998259 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.64 51.0 3.33e-01 90.0% 81.5%
4979383 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.63 51.0 3.38e-01 90.0% 91.7%
3369217 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.63 47.0 3.67e-01 90.0% 35.7%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.63 48.0 3.49e-01 88.0% 33.1%
4354137 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.63 46.0 2.97e-01 78.0% 39.7%
4934530 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.63 52.0 3.44e-01 90.0% 96.9%
4255854 4294.1.1.8 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.63 47.0 4.72e-01 98.0% 80.0%
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 47.0 3.72e-01 86.0% 90.0%
4556297 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.63 51.0 3.40e-01 90.0% 94.9%
5065765 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.63 45.0 3.00e-01 78.0% 42.7%
3300506 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.63 54.0 3.95e-01 100.0% 36.4%
3999814 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.62 53.0 3.69e-01 100.0% 40.6%
4953911 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.62 51.0 4.00e-01 96.0% 59.1%
5041229 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.61 44.0 4.16e-01 86.0% 63.3%
4959532 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.60 46.0 3.65e-01 90.0% 38.3%
3076054 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.60 50.0 3.09e-01 100.0% 51.4%
5000715 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.60 49.0 3.15e-01 92.0% 80.0%
4948083 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 48.0 3.17e-01 90.0% 92.2%
4426708 210.1.1.2 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.59 48.0 3.09e-01 92.0% 79.6%
4933457 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 47.0 3.11e-01 90.0% 85.9%
2980434 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 47.0 3.17e-01 90.0% 97.9%
2720803 5.1.4.338 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.58 49.0 3.60e-01 100.0% 86.4%
4975657 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 47.0 3.03e-01 90.0% 80.4%
3543547 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 47.0 3.10e-01 90.0% 88.3%
3491787 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 41.0 2.84e-01 90.0% 19.5%
4947399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.79e-01 94.0% 68.4%
4226342 3953.1.1.2 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.56 49.0 3.94e-01 100.0% 93.0%
4932317 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 46.0 3.09e-01 96.0% 44.4%
3252053 210.1.1.3 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.56 46.0 3.03e-01 100.0% 39.2%
4998349 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 48.0 3.20e-01 100.0% 44.2%
3784183 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.55 40.0 3.10e-01 84.0% 34.8%
3785954 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.55 43.0 2.69e-01 100.0% 31.0%
5029254 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 45.0 3.14e-01 100.0% 52.5%
4302934 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 47.0 3.23e-01 100.0% 47.7%
3949878 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.55 46.0 3.05e-01 98.0% 28.8%
2980438 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.54 47.0 3.12e-01 100.0% 42.8%
3513468 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.54 48.0 3.15e-01 100.0% 52.1%
3487530 210.1.1.2 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.54 46.0 2.98e-01 100.0% 37.8%
2980426 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.54 46.0 3.01e-01 100.0% 41.0%
2527260 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 43.0 2.77e-01 94.0% 17.5%
4945506 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 46.0 3.07e-01 100.0% 44.8%
3438106 210.1.1.2 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.53 46.0 2.98e-01 100.0% 38.6%
3269422 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 40.0 2.61e-01 88.0% 17.4%
3479088 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.53 46.0 3.04e-01 100.0% 40.8%
4359927 2003.1.2.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.53 36.0 2.45e-01 72.0% 68.2%
3942497 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 44.0 3.33e-01 96.0% 60.2%
5029261 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 2.96e-01 88.0% 29.3%
3573995 210.1.1.2 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.52 45.0 3.03e-01 100.0% 47.1%
3797631 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.52 46.0 2.95e-01 100.0% 41.2%
4027378 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.52 46.0 2.92e-01 100.0% 35.7%
4999721 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.52 45.0 2.91e-01 100.0% 38.7%
4100130 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.52 43.0 2.89e-01 100.0% 43.0%
3708171 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 44.0 3.09e-01 100.0% 55.2%
5078250 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 40.0 2.85e-01 100.0% 49.8%
5028087 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 42.0 3.32e-01 96.0% 47.8%