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NC_006883.2__YP_214288.1__PSSM2_056__00052

Bact-Vir

NC_006883.2__YP_214288.1__PSSM2_056__00052

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-130
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.30e-01 100.0% 60.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 5.06e-01 94.3% 94.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.72e-01 92.0% 90.4%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.38e-01 85.1% 93.4%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 4.28e-01 73.6% 83.8%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 37.0 4.18e-01 86.2% 96.6%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.23e-01 86.2% 93.5%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.70e-01 100.0% 95.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.03e-01 94.3% 91.5%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.21e-01 97.7% 77.2%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.39e-01 94.3% 54.0%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 34.0 2.91e-01 83.9% 37.0%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 4.09e-01 86.2% 95.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.89e-01 95.4% 78.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 34.0 2.80e-01 83.9% 34.3%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 31.0 3.62e-01 82.8% 89.3%
1r6zA03 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.52 44.0 3.98e-01 100.0% 82.5%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 41.0 3.69e-01 89.7% 80.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 53.0 5.60e-01 92.0% 93.3%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.80e-01 95.4% 96.2%
3501560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.17e-01 94.3% 77.8%
5016548 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 50.0 4.89e-01 79.3% 98.9%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 57.0 5.19e-01 96.6% 81.7%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 42.0 4.59e-01 85.1% 81.4%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 42.0 4.81e-01 86.2% 89.2%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 41.0 4.48e-01 85.1% 81.4%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.63 47.0 4.87e-01 93.1% 83.7%
3170397 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 40.0 4.20e-01 98.9% 70.0%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.63 47.0 4.55e-01 96.6% 71.6%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 37.0 4.19e-01 83.9% 88.3%
3251420 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.36e-01 95.4% 76.7%
4952879 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.58 46.0 4.31e-01 86.2% 84.5%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 49.0 4.79e-01 93.1% 85.3%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 36.0 4.17e-01 82.8% 100.0%
3990037 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.57 45.0 3.87e-01 86.2% 77.9%
3600338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.01e-01 93.1% 76.2%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 35.0 3.67e-01 81.6% 67.5%
4527565 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.56 44.0 3.82e-01 86.2% 79.3%
3604673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.56e-01 96.6% 89.5%
3489935 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.54 39.0 3.05e-01 75.9% 45.6%
3612689 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.49e-01 72.4% 96.4%
3231216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.61e-01 94.3% 100.0%
3238004 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 27.0 3.38e-01 79.3% 88.0%
4032314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.57e-01 81.6% 88.7%
3232550 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.56e-01 100.0% 74.1%
3886850 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.50 40.0 3.90e-01 86.2% 98.0%
3271444 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 35.0 2.46e-01 89.7% 23.1%
D2 medium residues 142-212
PDB
Domain cluster: representative