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NC_006883.2__YP_214319.1__PSSM2_087__00083
Bact-VirNC_006883.2__YP_214319.1__PSSM2_087__00083
Identity
- Accession:
- NC_006883 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Salacisavirus›
Prochlorococcus_phage_P-SSM2
TaxID: 268746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-61
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 50.0 | 5.01e-01 | 74.1% | 82.8% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 44.0 | 4.64e-01 | 93.1% | 95.7% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.63 | 48.0 | 3.42e-01 | 84.5% | 40.1% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.62 | 43.0 | 3.41e-01 | 72.4% | 89.6% |
| 1cy9A01 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.62 | 44.0 | 3.58e-01 | 77.6% | 83.9% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 46.0 | 4.71e-01 | 91.4% | 86.0% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.61 | 47.0 | 3.85e-01 | 84.5% | 52.7% |
| 2hpsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 46.0 | 3.25e-01 | 87.9% | 37.0% |
| 2heuB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 40.0 | 2.99e-01 | 82.8% | 57.6% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.54 | 42.0 | 2.61e-01 | 86.2% | 14.2% |
| 2oyoA01 | 1.20.5.810 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like | 0.53 | 40.0 | 4.14e-01 | 98.3% | 96.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015442 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.78 | 60.0 | 5.52e-01 | 82.8% | 81.3% |
| 3598477 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.76 | 56.0 | 3.52e-01 | 82.8% | 15.3% |
| 3786829 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.74 | 54.0 | 3.49e-01 | 82.8% | 17.0% |
| 4489811 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.71 | 57.0 | 6.01e-01 | 89.7% | 100.0% |
| 3258469 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.70 | 51.0 | 3.46e-01 | 82.8% | 20.4% |
| 3687896 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 50.0 | 3.33e-01 | 82.8% | 19.2% |
| 4040783 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 49.0 | 5.07e-01 | 81.0% | 89.1% |
| 4048400 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.67 | 52.0 | 4.68e-01 | 87.9% | 63.5% |
| 3383540 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.67 | 56.0 | 3.60e-01 | 94.8% | 54.9% |
| 4377543 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.65 | 46.0 | 4.59e-01 | 81.0% | 75.0% |
| 3454432 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.64 | 55.0 | 3.57e-01 | 98.3% | 51.7% |
| 3383539 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.64 | 55.0 | 3.64e-01 | 100.0% | 56.8% |
| 144823 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.61 | 46.0 | 4.71e-01 | 91.4% | 86.0% |
| 4033799 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.61 | 44.0 | 4.66e-01 | 81.0% | 96.0% |
| 3844595 | 108.1.1.1 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 | 0.61 | 51.0 | 4.30e-01 | 94.8% | 55.0% |
| 4847389 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.60 | 48.0 | 4.39e-01 | 94.8% | 65.8% |
| 4091000 | 632.2.1.16 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PLDc_N | 0.56 | 40.0 | 3.87e-01 | 84.5% | 67.1% |