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NC_006883.2__YP_214327.1__PSSM2_095__00092

Bact-Vir

NC_006883.2__YP_214327.1__PSSM2_095__00092

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: rep: HQ633071.1__AGH31702.1__SWZG_00196__00189__D6-49
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 58.0 4.14e-01 100.0% 89.3%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 43.0 3.59e-01 76.6% 34.4%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 56.0 4.05e-01 100.0% 89.9%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 54.0 4.57e-01 100.0% 98.9%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 51.0 3.67e-01 97.9% 77.7%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 51.0 3.64e-01 100.0% 37.4%
3e56A00 6.20.180.10 Special › Other non-globular › Ubiquitin-like (UB roll) › 0.60 41.0 3.58e-01 80.9% 45.3%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.58 48.0 3.77e-01 100.0% 41.6%
1tfrA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 47.0 3.13e-01 93.6% 37.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 4.04e-01 100.0% 64.5%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 48.0 4.08e-01 100.0% 80.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 47.0 4.18e-01 100.0% 65.8%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.56 38.0 4.03e-01 100.0% 85.0%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.49e-01 89.4% 50.5%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.54 44.0 3.10e-01 100.0% 44.3%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.54 38.0 3.18e-01 78.7% 97.8%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 45.0 3.76e-01 100.0% 57.0%
8onjA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 40.0 2.91e-01 91.5% 44.2%
2eiyB02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 46.0 3.13e-01 100.0% 34.1%
4jxuA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 45.0 3.13e-01 100.0% 37.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4079979 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.74 66.0 5.31e-01 100.0% 93.3%
4946744 304.128.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB › FtsX 0.72 63.0 5.02e-01 100.0% 85.3%
1936664 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.70 59.0 4.87e-01 100.0% 97.8%
5053150 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 46.0 3.21e-01 76.6% 88.4%
3748074 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.64 52.0 3.76e-01 100.0% 82.5%
3626522 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.63 40.0 3.87e-01 100.0% 56.4%
3520339 110.3.1.1 ↗ alpha arrays › DEATH domain › SLED domain › SLED domain › SLED 0.62 50.0 3.84e-01 93.6% 99.1%
3974138 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.62 52.0 3.52e-01 93.6% 30.3%
5070324 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.62 49.0 3.15e-01 89.4% 29.0%
3912948 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.61 53.0 4.08e-01 100.0% 51.8%
3577361 2.1.1.215 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_1st 0.61 43.0 3.32e-01 72.3% 50.0%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 47.0 4.52e-01 100.0% 84.5%
3734753 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.59 44.0 2.59e-01 80.9% 90.0%
5051386 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.02e-01 80.9% 40.6%
4560519 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.59 40.0 2.49e-01 72.3% 42.6%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 45.0 4.45e-01 100.0% 88.0%
3840090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 2.94e-01 89.4% 56.1%
3958287 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.57 48.0 3.15e-01 97.9% 28.9%
5065139 329.1.1.2 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 0.56 40.0 3.20e-01 80.9% 47.3%
3281849 303.1.1.3 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.56 43.0 3.47e-01 100.0% 39.8%
3474293 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 2.90e-01 80.9% 33.3%
4947839 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 2.95e-01 78.7% 45.6%
4013658 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.54 43.0 3.26e-01 100.0% 37.1%
3513859 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.33e-01 100.0% 94.0%
3392685 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.21e-01 100.0% 100.0%
4946800 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.00e-01 95.7% 85.2%