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NC_006883.2__YP_214339.1__PSSM2_107__00106

Bact-Vir

NC_006883.2__YP_214339.1__PSSM2_107__00106

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-50
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.74 66.0 4.83e-01 100.0% 92.6%
1d8hA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.70 53.0 3.23e-01 82.6% 60.4%
2fcbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 50.0 4.16e-01 100.0% 42.5%
2napA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 56.0 3.45e-01 100.0% 63.7%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 48.0 3.41e-01 82.6% 86.6%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 51.0 4.48e-01 100.0% 62.0%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 49.0 4.08e-01 100.0% 64.6%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 45.0 4.31e-01 93.5% 71.4%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.54e-01 100.0% 52.5%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 3.92e-01 100.0% 64.9%
1sjrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 46.0 3.74e-01 100.0% 73.1%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.58 49.0 3.40e-01 100.0% 64.0%
6edhA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.57 47.0 2.94e-01 91.3% 46.3%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.49e-01 100.0% 49.2%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.57 48.0 3.49e-01 100.0% 33.8%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.56 48.0 4.37e-01 100.0% 77.8%
2qhqA00 3.20.160.10 Alpha Beta › Alpha-Beta Barrel › pseudo Tubby roll › vpa0580 domain like 0.52 43.0 3.33e-01 100.0% 63.0%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 39.0 3.52e-01 100.0% 79.7%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.50 40.0 3.36e-01 100.0% 85.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217685 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.73 54.0 5.06e-01 100.0% 65.5%
4124102 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.69 62.0 3.85e-01 100.0% 30.8%
4443055 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.68 59.0 3.58e-01 100.0% 56.7%
3244906 221.1.1.113 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.66 57.0 4.34e-01 100.0% 66.4%
3964707 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.63 56.0 3.56e-01 100.0% 31.7%
3929134 221.1.1.113 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.61 52.0 3.93e-01 100.0% 51.7%
3217385 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.89e-01 87.0% 90.6%
3938050 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.60 49.0 3.32e-01 89.1% 26.2%
184943 10.2.1.80 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_C 0.57 45.0 3.49e-01 100.0% 49.2%
3667522 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.55 41.0 2.82e-01 84.8% 32.8%
4922639 3819.1.1.1 ↗ alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › CRISPR-associated endonuclease Cas9 alpha-helical lobe › Cas9_REC 0.55 48.0 2.78e-01 97.8% 57.0%
3336122 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 3.44e-01 100.0% 62.4%
3660081 10.32.1.37 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin 0.54 45.0 3.11e-01 100.0% 30.6%
3689809 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 40.0 4.02e-01 100.0% 93.3%
2389482 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.54 44.0 3.16e-01 100.0% 54.3%
3392216 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.53 44.0 2.94e-01 93.5% 38.4%
3267216 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 3.51e-01 100.0% 67.6%
3834712 206.1.1.105 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Malectin_like 0.52 43.0 3.05e-01 100.0% 29.1%
3822539 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.06e-01 95.7% 74.8%
3242452 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.36e-01 100.0% 65.0%
3808345 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.50 42.0 3.33e-01 100.0% 44.8%