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NC_006883.2__YP_214357.1__PSSM2_125__00124

Bact-Vir

Identity

Accession:: NC_006883 ↗
Kingdom:: phage

Quality

49.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 391-506

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h0gA05	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.66	46.0	4.26e-01	76.7%	56.8%
2uv8A07	6.10.140.1410	Special › Helix non-globular › Helix Hairpins ›	0.65	39.0	4.53e-01	73.3%	82.4%
1zoyD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.62	41.0	4.36e-01	81.0%	75.5%
3c8tA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.59	34.0	3.65e-01	84.5%	64.9%
1t6jA03	1.10.274.20	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3	0.59	34.0	3.55e-01	80.2%	61.2%
1kz7A01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.55	40.0	3.37e-01	75.0%	88.1%
1hwyA03	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	41.0	3.14e-01	86.2%	56.9%
4ri6A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	29.0	2.89e-01	72.4%	50.4%
7oq4Z01	1.20.120.950	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062	0.52	31.0	3.34e-01	75.9%	69.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3904078	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.62	34.0	4.10e-01	73.3%	83.6%
4227843	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.58	38.0	4.09e-01	73.3%	78.0%
4989988	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.56	40.0	4.27e-01	75.0%	88.0%
3282465	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.54	39.0	4.22e-01	76.7%	89.5%
4933677	3563.1.1.1 ↗	alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC	0.54	40.0	3.20e-01	79.3%	98.0%
3649222	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.53	37.0	2.69e-01	88.8%	23.9%
2464331	1075.1.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG	0.53	38.0	3.57e-01	75.0%	73.2%