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NC_006883.2__YP_214381.1__PSSM2_149__00148

Bact-Vir

NC_006883.2__YP_214381.1__PSSM2_149__00148

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
Domain cluster: rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175__D96-187
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.70 50.0 5.07e-01 92.9% 75.9%
1v72A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 50.0 4.79e-01 85.9% 87.1%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.60 42.0 4.52e-01 85.9% 87.5%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 45.0 3.24e-01 84.7% 88.8%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 45.0 3.23e-01 85.9% 87.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.57 44.0 4.65e-01 85.9% 93.4%
2ejeA00 3.90.1460.10 Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like 0.54 44.0 4.10e-01 95.3% 82.5%
3wscA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.51 38.0 2.80e-01 82.4% 82.5%
2ae0X02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.50 38.0 3.31e-01 82.4% 89.9%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.20e-01 77.6% 53.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 74.0 7.47e-01 100.0% 95.3%
4966035 376.1.3.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.75 43.0 5.00e-01 78.8% 80.0%
3700533 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 41.0 2.83e-01 92.9% 17.0%
4959591 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 50.0 5.63e-01 89.4% 93.8%
3286658 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.64 49.0 4.23e-01 92.9% 53.1%
5021347 376.1.2.45 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › DUF2180 0.62 37.0 4.21e-01 74.1% 78.5%
3439077 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 34.0 3.31e-01 88.2% 49.5%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.60 49.0 4.46e-01 88.2% 66.4%
3595319 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 4.35e-01 89.4% 75.7%
4470331 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.59 46.0 4.48e-01 85.9% 96.8%
3680410 213.1.1.78 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF27744 0.57 36.0 2.74e-01 81.2% 23.9%
4032763 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 40.0 3.87e-01 74.1% 87.4%
4939512 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.54 41.0 3.28e-01 83.5% 62.8%
5026102 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.53 43.0 3.15e-01 91.8% 91.3%
3575349 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.53 44.0 3.11e-01 92.9% 83.4%
3230226 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.52 38.0 2.88e-01 98.8% 33.3%
3947188 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 45.0 4.19e-01 96.5% 85.7%
3391261 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.51 35.0 3.14e-01 95.3% 50.0%
3685300 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.51 45.0 3.32e-01 97.6% 42.3%
5076107 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 39.0 4.02e-01 95.3% 88.7%
3914801 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.50 35.0 3.17e-01 74.1% 50.4%