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NC_006883.2__YP_214410.1__PSSM2_178__00177
Bact-VirNC_006883.2__YP_214410.1__PSSM2_178__00177
Identity
- Accession:
- NC_006883 ↗
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Salacisavirus›
Prochlorococcus_phage_P-SSM2
TaxID: 268746
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-53
Domain cluster:
rep: IMGVR_UViG_3300025159_000828-3300025159-Ga0209619_1000369613__D4-51
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11211.14 best | DUF2997 | 66.7 | 1.90e-18 | 97.9% | 100.0% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 54.0 | 4.65e-01 | 87.5% | 53.1% |
| 5ck3C00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 45.0 | 3.59e-01 | 75.0% | 69.5% |
| 1fm2A00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.65 | 42.0 | 3.07e-01 | 77.1% | 21.7% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.64 | 44.0 | 3.72e-01 | 75.0% | 40.4% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.63 | 50.0 | 4.37e-01 | 91.7% | 58.4% |
| 1ceeB00 | 3.90.810.10 | Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain | 0.62 | 46.0 | 4.39e-01 | 89.6% | 67.8% |
| 4bsrB01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.62 | 52.0 | 3.04e-01 | 100.0% | 14.3% |
| 1k2xB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.61 | 48.0 | 3.63e-01 | 93.8% | 52.6% |
| 1nxuA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.60 | 48.0 | 3.57e-01 | 100.0% | 89.9% |
| 2gacB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.59 | 49.0 | 3.61e-01 | 97.9% | 58.3% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 3.49e-01 | 87.5% | 48.3% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 40.0 | 3.36e-01 | 70.8% | 41.4% |
| 3gr0D01 | 3.30.70.1780 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 44.0 | 4.62e-01 | 87.5% | 100.0% |
| 5mp7A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 47.0 | 3.41e-01 | 100.0% | 33.3% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.58 | 42.0 | 3.31e-01 | 93.8% | 38.1% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.57 | 40.0 | 2.80e-01 | 75.0% | 33.1% |
| 4gdxB00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.57 | 39.0 | 2.69e-01 | 75.0% | 46.0% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 40.0 | 2.49e-01 | 83.3% | 11.8% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.56 | 39.0 | 3.54e-01 | 77.1% | 52.1% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 44.0 | 3.31e-01 | 100.0% | 33.6% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.55 | 38.0 | 3.00e-01 | 83.3% | 87.9% |
| 7w09A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 41.0 | 2.70e-01 | 87.5% | 24.5% |
| 1apyB00 | 3.60.20.30 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase | 0.54 | 41.0 | 3.13e-01 | 93.8% | 50.4% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 43.0 | 3.03e-01 | 100.0% | 80.6% |
| 2pytA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 42.0 | 3.29e-01 | 100.0% | 85.9% |
| 3ou2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 2.88e-01 | 100.0% | 79.9% |
| 5nqdA01 | 3.30.200.200 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.51 | 40.0 | 2.94e-01 | 100.0% | 58.1% |
| 4bthA00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.51 | 41.0 | 2.94e-01 | 97.9% | 56.7% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.51 | 42.0 | 3.01e-01 | 100.0% | 59.0% |
| 3vqiA01 | 3.10.20.620 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 42.0 | 3.37e-01 | 100.0% | 70.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936127 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.71 | 57.0 | 5.00e-01 | 91.7% | 65.3% |
| 4343880 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.67 | 54.0 | 4.62e-01 | 95.8% | 58.8% |
| 4955569 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.64 | 52.0 | 3.69e-01 | 100.0% | 35.4% |
| 3898657 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.63 | 50.0 | 4.49e-01 | 95.8% | 73.3% |
| 3164240 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.62 | 47.0 | 4.29e-01 | 87.5% | 60.0% |
| 4534744 | 6051.5.1.2 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › PF27494 | 0.62 | 43.0 | 3.86e-01 | 75.0% | 60.0% |
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.62 | 50.0 | 3.59e-01 | 100.0% | 34.3% |
| 4947181 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.61 | 48.0 | 4.37e-01 | 93.8% | 70.0% |
| 3621728 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.61 | 47.0 | 4.16e-01 | 93.8% | 62.5% |
| 3719086 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 43.0 | 3.38e-01 | 83.3% | 91.2% |
| 3633074 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 40.0 | 2.70e-01 | 70.8% | 18.5% |
| 1224463 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 40.0 | 4.01e-01 | 75.0% | 75.5% |
| 3987094 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.58 | 43.0 | 3.33e-01 | 83.3% | 65.0% |
| 4058492 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 40.0 | 3.17e-01 | 77.1% | 73.0% |
| 4985007 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.56 | 43.0 | 3.18e-01 | 87.5% | 30.8% |
| 3677489 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.56 | 45.0 | 2.68e-01 | 100.0% | 41.6% |
| 2126757 | 170.2.1.1 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 | 0.55 | 38.0 | 3.00e-01 | 83.3% | 87.9% |
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.54 | 41.0 | 3.88e-01 | 89.6% | 70.0% |
| 4411025 | 284.1.3.3 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 | 0.54 | 42.0 | 3.76e-01 | 97.9% | 71.2% |
| 4934021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.05e-01 | 83.3% | 61.7% |
| 3601833 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 40.0 | 2.36e-01 | 100.0% | 13.1% |
| 3850966 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.53 | 40.0 | 2.67e-01 | 91.7% | 19.6% |
| 5083025 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.53 | 40.0 | 3.20e-01 | 95.8% | 80.8% |
| 5007658 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 40.0 | 3.19e-01 | 100.0% | 38.5% |
| 3178390 | 373.1.1.0 ↗ | few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain | 0.52 | 37.0 | 3.47e-01 | 79.2% | 98.5% |
| 3646861 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 42.0 | 2.81e-01 | 97.9% | 25.7% |
| 3721318 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.50 | 39.0 | 3.48e-01 | 100.0% | 69.4% |
| 4191800 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.50 | 39.0 | 3.80e-01 | 97.9% | 96.4% |