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NC_006883.2__YP_214438.1__PSSM2_207__00205

Bact-Vir

NC_006883.2__YP_214438.1__PSSM2_207__00205

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92
PDB
D2 medium residues 132-203
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.74 67.0 5.55e-01 100.0% 76.2%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.73 66.0 5.35e-01 100.0% 72.4%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 52.0 5.18e-01 100.0% 74.0%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.72 65.0 5.36e-01 100.0% 74.8%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.70 62.0 5.09e-01 100.0% 73.1%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 45.0 3.53e-01 90.3% 36.2%
1dymA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.62 51.0 3.27e-01 94.4% 74.6%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.65e-01 88.9% 88.6%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.46e-01 88.9% 87.9%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 48.0 3.95e-01 90.3% 65.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 46.0 4.47e-01 87.5% 75.6%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 47.0 4.19e-01 86.1% 98.0%
3n7zA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 48.0 3.72e-01 90.3% 49.7%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.06e-01 94.4% 81.2%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.61e-01 90.3% 54.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 3.92e-01 95.8% 75.7%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 39.0 3.05e-01 91.7% 29.9%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.73e-01 87.5% 92.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 3.81e-01 77.8% 75.8%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 42.0 3.21e-01 83.3% 86.9%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.17e-01 93.1% 82.4%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.44e-01 90.3% 56.3%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.19e-01 90.3% 40.5%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 43.0 3.24e-01 91.7% 35.6%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.57e-01 91.7% 57.4%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 47.0 3.85e-01 100.0% 78.6%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.54 45.0 3.60e-01 95.8% 63.5%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.54 44.0 4.03e-01 91.7% 84.7%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 38.0 2.93e-01 75.0% 96.7%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.53 46.0 3.39e-01 95.8% 65.1%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 39.0 2.72e-01 79.2% 39.4%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.53 41.0 3.39e-01 90.3% 99.4%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.35e-01 95.8% 56.5%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.53 41.0 3.50e-01 87.5% 75.4%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.48e-01 87.5% 64.0%
5cwaA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 42.0 2.54e-01 87.5% 83.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.52 43.0 3.16e-01 91.7% 82.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 2.90e-01 88.9% 37.3%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 2.94e-01 90.3% 46.4%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.29e-01 91.7% 52.4%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.40e-01 90.3% 57.3%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.52 43.0 3.49e-01 94.4% 83.4%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.14e-01 97.2% 83.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.55e-01 86.1% 73.1%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 36.0 2.97e-01 94.4% 40.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3074400 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.89 79.0 6.98e-01 94.4% 72.7%
3511263 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.75 52.0 4.68e-01 98.6% 53.7%
4588732 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.75 66.0 5.29e-01 95.8% 75.6%
4345683 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.74 67.0 5.54e-01 100.0% 76.8%
3387388 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.74 67.0 5.52e-01 100.0% 77.6%
4186968 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.74 66.0 5.40e-01 98.6% 72.3%
4099289 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.73 66.0 5.36e-01 98.6% 71.5%
4431937 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.73 65.0 5.21e-01 98.6% 69.3%
4206082 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.72 66.0 5.36e-01 100.0% 74.6%
4467859 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.72 64.0 5.28e-01 97.2% 72.8%
3948312 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.72 66.0 5.88e-01 100.0% 77.0%
4157635 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.72 64.0 5.32e-01 98.6% 76.0%
4434598 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.72 65.0 5.28e-01 98.6% 69.2%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.72 55.0 5.01e-01 100.0% 62.1%
1407259 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.71 64.0 5.33e-01 100.0% 75.2%
4096247 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.71 64.0 5.28e-01 98.6% 73.6%
3589490 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.71 64.0 5.18e-01 100.0% 76.3%
6450 4023.1.1.2 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › Helic-prim_T7_N 0.70 50.0 5.02e-01 100.0% 74.0%
3978060 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.69 62.0 5.58e-01 100.0% 73.0%
3948068 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.69 60.0 5.20e-01 95.8% 71.8%
5042979 241.1.1.30 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.67 45.0 3.48e-01 84.7% 33.3%
3990074 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.65 52.0 4.66e-01 90.3% 81.9%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 41.0 4.16e-01 84.7% 65.7%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.29e-01 83.3% 70.0%
3590145 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.63 52.0 3.96e-01 90.3% 63.6%
3182774 9.4.1.2 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF3471 0.62 47.0 3.94e-01 84.7% 48.3%
4952713 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.62 36.0 3.20e-01 80.6% 40.0%
1649977 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.61 49.0 4.62e-01 88.9% 86.7%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 41.0 4.00e-01 84.7% 62.5%
3989733 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.60 49.0 3.76e-01 90.3% 61.8%
863 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.59 48.0 4.26e-01 87.5% 98.1%
None 0.59 46.0 3.63e-01 86.1% 40.7%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 38.0 3.62e-01 83.3% 53.3%
2740077 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.58 47.0 4.30e-01 88.9% 80.4%
4372560 71.1.1.6 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.58 47.0 3.48e-01 91.7% 37.3%
3652288 145.1.1.50 alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.58 48.0 3.22e-01 93.1% 80.0%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 38.0 3.56e-01 83.3% 53.3%
4007854 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.57 46.0 4.38e-01 88.9% 88.2%
5034173 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.57 48.0 3.12e-01 97.2% 81.4%
3968297 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 45.0 3.58e-01 87.5% 87.3%
3164516 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.57 45.0 4.35e-01 91.7% 92.9%
4033455 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.57 45.0 3.50e-01 87.5% 94.5%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 39.0 3.99e-01 84.7% 77.1%
4449996 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.55 44.0 3.84e-01 90.3% 64.3%
None 0.55 45.0 3.49e-01 95.8% 64.5%
3476001 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.55 44.0 4.03e-01 100.0% 67.7%
143747 213.1.1.3 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Autoind_synth 0.55 43.0 3.36e-01 90.3% 55.4%
3183104 9.4.1.2 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF3471 0.54 46.0 3.83e-01 95.8% 96.9%
3635423 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.54 47.0 3.50e-01 97.2% 56.8%
3427891 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 48.0 3.10e-01 97.2% 32.0%
4993396 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 45.0 3.05e-01 95.8% 63.7%
303387 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 43.0 3.13e-01 90.3% 40.5%
3968457 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.54 43.0 4.15e-01 90.3% 92.9%
3501545 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.53 47.0 3.60e-01 100.0% 68.8%
3283031 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.53 41.0 3.76e-01 83.3% 71.6%
11107 213.1.1.7 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.53 43.0 3.36e-01 91.7% 52.4%
3495079 77.3.1.5 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 0.52 44.0 2.97e-01 97.2% 25.3%
4580919 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.52 42.0 4.07e-01 90.3% 96.2%
4598563 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.51 43.0 2.65e-01 98.6% 97.7%
3925444 5087.3.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.51 44.0 3.24e-01 100.0% 64.6%
3164943 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.51 29.0 3.14e-01 87.5% 65.0%
185181 11.1.1.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IalB 0.51 42.0 3.42e-01 94.4% 83.1%
3588775 244.3.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM 0.50 42.0 3.75e-01 95.8% 64.8%
D3 medium residues 204-323
PDB