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NC_006883.2__YP_214515.1__PSSM2_284__00284

Bact-Vir

Identity

Accession:: NC_006883 ↗
Kingdom:: phage

Quality

56.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 659-717

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k7iA01	3.30.160.160	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like	0.59	33.0	3.55e-01	91.5%	64.6%
6gfaA02	3.30.30.30	Alpha Beta › 2-Layer Sandwich › Defensin A-like ›	0.58	34.0	3.52e-01	100.0%	57.1%
4i93A01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.57	49.0	4.22e-01	98.3%	82.1%
3uimA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.55	47.0	4.15e-01	98.3%	79.8%
4iupB01	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	35.0	3.49e-01	98.3%	62.9%
4g6tA00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.54	46.0	3.65e-01	100.0%	58.6%
2bolA03	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	45.0	3.92e-01	98.3%	97.8%
3kxyJ00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.51	43.0	3.45e-01	100.0%	58.9%
8gn6A01	2.120.10.10	Mainly Beta › 6 Propeller › Neuraminidase ›	0.50	35.0	2.24e-01	76.3%	29.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3514864	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.62	32.0	3.37e-01	89.8%	52.7%
4119875	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.60	32.0	3.17e-01	91.5%	46.2%
4501358	206.1.1.32 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › LepB_N	0.55	47.0	3.03e-01	100.0%	30.0%
3822378	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.54	47.0	2.88e-01	100.0%	19.7%
3673308	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.54	47.0	2.88e-01	100.0%	20.0%
3216466	209.1.1.1 ↗	a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C	0.54	44.0	3.34e-01	94.9%	91.2%
3661496	12.3.1.3 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim	0.54	44.0	2.85e-01	100.0%	85.0%
3718225	241.1.1.3 ↗	a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT	0.52	45.0	3.46e-01	100.0%	61.4%
3367579	206.1.1.70 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1	0.52	45.0	2.82e-01	100.0%	23.8%
3829109	376.1.2.16 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT	0.51	36.0	3.57e-01	88.1%	70.8%
3260733	220.1.1.158 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1	0.51	41.0	3.32e-01	100.0%	47.3%
4194704	391.1.1.1 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1	0.51	32.0	3.45e-01	100.0%	78.0%

D2 medium residues 2-54_292-392

PDB

D3 medium residues 60-128

PDB

D4 medium residues 129-282

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1eqtA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	23.0	3.22e-01	94.2%	83.6%
4f0aB02	3.30.2460.20	Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain	0.51	24.0	3.36e-01	100.0%	95.6%

D5 medium residues 510-601

PDB

D6 medium residues 882-1000

PDB