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NC_006883.2__YP_214518.1__PSSM2_287__00287
Bact-VirNC_006883.2__YP_214518.1__PSSM2_287__00287
Identity
- Accession:
- NC_006883 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Salacisavirus›
Prochlorococcus_phage_P-SSM2
TaxID: 268746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
rep: IMGVR_UViG_3300001346_000109-3300001346-JGI20151J14362_1000122012__D9-61
D2
high
residues 68-113
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mnkA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 35.0 | 3.16e-01 | 84.8% | 46.2% |
| 3zssA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 38.0 | 2.28e-01 | 97.8% | 9.5% |
| 2iu4A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.50 | 42.0 | 2.99e-01 | 95.7% | 33.8% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 37.0 | 3.46e-01 | 87.0% | 83.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036792 | 3961.1.1.0 ↗ | 0.68 | 51.0 | 3.86e-01 | 80.4% | 89.5% | |
| 3537307 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.60 | 53.0 | 4.03e-01 | 100.0% | 50.0% |
| 4959344 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.58 | 40.0 | 2.69e-01 | 100.0% | 15.9% |
| None | — | 0.52 | 41.0 | 2.52e-01 | 93.5% | 27.0% | |
| 4182571 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.50 | 38.0 | 2.34e-01 | 93.5% | 45.1% |