Back to structures

NC_006883.2__YP_214518.1__PSSM2_287__00287

Bact-Vir

NC_006883.2__YP_214518.1__PSSM2_287__00287

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
D2 high residues 68-113
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 35.0 3.16e-01 84.8% 46.2%
3zssA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 38.0 2.28e-01 97.8% 9.5%
2iu4A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.50 42.0 2.99e-01 95.7% 33.8%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 37.0 3.46e-01 87.0% 83.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036792 3961.1.1.0 0.68 51.0 3.86e-01 80.4% 89.5%
3537307 377.1.1.34 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.60 53.0 4.03e-01 100.0% 50.0%
4959344 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.58 40.0 2.69e-01 100.0% 15.9%
None 0.52 41.0 2.52e-01 93.5% 27.0%
4182571 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 38.0 2.34e-01 93.5% 45.1%