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NC_006883.2__YP_214536.1__PSSM2_305__00305

Bact-Vir

NC_006883.2__YP_214536.1__PSSM2_305__00305

Identity

Accession:
NC_006883 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Salacisavirus› Prochlorococcus_phage_P-SSM2

TaxID: 268746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-133
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zxkB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 23.0 2.75e-01 96.9% 62.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080678 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.52 21.0 2.86e-01 94.6% 74.5%
3231263 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.50 22.0 3.09e-01 98.5% 94.0%
D2 high residues 138-217
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.68 59.0 4.23e-01 98.8% 80.8%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 59.0 4.53e-01 95.0% 56.2%
4kjmB01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 50.0 5.55e-01 93.8% 100.0%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 59.0 5.02e-01 97.5% 67.9%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 58.0 5.11e-01 100.0% 77.0%
3op0A01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.65 58.0 4.88e-01 98.8% 66.2%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 57.0 4.58e-01 97.5% 83.4%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.65 57.0 4.93e-01 95.0% 94.2%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 58.0 5.15e-01 98.8% 79.5%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 51.0 4.97e-01 98.8% 82.8%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.62 55.0 4.06e-01 98.8% 72.6%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 51.0 4.24e-01 95.0% 81.0%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.61 53.0 5.05e-01 95.0% 87.4%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.61 52.0 4.72e-01 98.8% 76.3%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 48.0 4.54e-01 98.8% 72.4%
1wyrA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.59 38.0 3.36e-01 100.0% 43.0%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 50.0 3.75e-01 100.0% 87.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.57 40.0 3.93e-01 83.7% 66.7%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.55 42.0 2.49e-01 87.5% 67.7%
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.74e-01 73.8% 76.0%
1mabB03 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.50 38.0 3.40e-01 83.7% 72.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177197 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.75 67.0 4.49e-01 97.5% 72.5%
3892225 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.74 67.0 5.92e-01 98.8% 89.6%
3510392 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.73 66.0 5.91e-01 98.8% 93.6%
3251304 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.72 66.0 5.87e-01 98.8% 75.5%
3422266 3562.1.1.0 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 0.72 64.0 5.42e-01 96.2% 79.2%
3417481 632.2.1.27 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GAUT_1 0.71 63.0 5.95e-01 97.5% 81.1%
5026526 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 64.0 5.92e-01 100.0% 79.0%
3686849 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.70 48.0 3.62e-01 70.0% 34.1%
3193097 5001.1.1.85 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin 0.70 57.0 4.08e-01 90.0% 38.4%
3222373 605.4.1.18 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 0.70 61.0 6.04e-01 96.2% 94.1%
3717920 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.70 63.0 5.06e-01 100.0% 65.2%
3383337 192.29.1.27 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1218 0.69 62.0 4.85e-01 96.2% 68.8%
3441543 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.69 60.0 5.46e-01 98.8% 91.8%
3211383 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.68 61.0 5.69e-01 98.8% 90.0%
3648197 3755.4.1.17 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.68 60.0 4.77e-01 97.5% 53.8%
5028217 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 58.0 4.43e-01 97.5% 43.7%
3423387 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.67 58.0 5.31e-01 100.0% 79.1%
5047771 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 57.0 5.04e-01 95.0% 80.0%
4951260 601.14.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.66 57.0 4.81e-01 98.8% 66.4%
4288630 603.1.1.153 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DGCcoil 0.66 50.0 4.42e-01 93.8% 56.5%
3800850 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 4.27e-01 97.5% 40.5%
4401093 1046.1.1.1 ↗ alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 0.65 55.0 4.45e-01 91.3% 56.0%
1679505 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.65 57.0 4.78e-01 95.0% 86.3%
3931107 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.65 55.0 4.69e-01 92.5% 76.9%
3613569 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.65 54.0 3.30e-01 91.3% 23.0%
3717798 109.4.1.628 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.65 52.0 3.17e-01 97.5% 12.5%
3578270 2008.1.1.94 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 0.65 56.0 4.27e-01 97.5% 41.6%
3622568 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.64 54.0 5.25e-01 96.2% 82.2%
3535849 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.64 52.0 3.46e-01 87.5% 70.1%
3670937 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.63 55.0 4.69e-01 97.5% 62.3%
3598200 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.62 52.0 3.47e-01 92.5% 74.0%
3279863 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.61 52.0 3.60e-01 97.5% 71.9%
3246087 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 55.0 4.06e-01 97.5% 51.6%
3260332 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.60 51.0 4.09e-01 96.2% 58.2%
3592312 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.60 50.0 3.31e-01 91.3% 63.2%
3709613 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.60 49.0 3.36e-01 92.5% 64.1%
4352214 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.60 49.0 3.34e-01 93.8% 68.8%
3902657 150.1.2.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.59 49.0 3.70e-01 91.3% 66.2%
3718324 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.59 48.0 3.12e-01 88.7% 70.6%
3706915 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 46.0 4.79e-01 88.7% 98.6%
3700564 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.58 48.0 3.21e-01 88.7% 66.6%
4113259 2004.1.1.470 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C 0.57 49.0 2.79e-01 98.8% 8.2%
3964803 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 44.0 3.08e-01 90.0% 66.6%
3640422 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 49.0 3.29e-01 100.0% 73.5%
3993671 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.53 37.0 3.76e-01 72.5% 73.8%
4971390 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 46.0 3.16e-01 97.5% 54.3%
None — 0.50 39.0 2.58e-01 83.7% 79.7%