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NC_007021.1__YP_238626.1__TwortORF038__00092

Bact-Vir

NC_007021.1__YP_238626.1__TwortORF038__00092

Identity

Accession:
NC_007021 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Twortvirus› Staphylococcus_phage_Twort

TaxID: 2908167

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-162
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D10-175
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 38.0 4.59e-01 71.0% 96.0%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 24.0 3.42e-01 92.9% 74.3%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 42.0 4.19e-01 98.1% 71.0%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 42.0 3.76e-01 97.4% 52.8%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 27.0 3.29e-01 85.8% 69.5%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.56 26.0 2.99e-01 78.7% 55.7%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.55 36.0 4.22e-01 74.2% 91.2%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 30.0 3.14e-01 98.1% 54.7%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 28.0 3.75e-01 77.4% 100.0%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 29.0 3.39e-01 89.7% 74.6%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.78e-01 100.0% 74.0%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.99e-01 100.0% 74.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 31.0 3.22e-01 100.0% 64.1%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 44.0 3.69e-01 97.4% 56.6%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 43.0 3.84e-01 97.4% 66.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1720440 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.59 42.0 3.65e-01 97.4% 47.6%
3252422 881.1.1.2 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.55 31.0 2.94e-01 88.4% 45.3%
4021156 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 33.0 3.26e-01 91.0% 56.4%
3609683 9.14.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › Lipocalin_5 0.53 39.0 4.44e-01 91.6% 100.0%
4518553 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 30.0 3.28e-01 83.9% 67.5%
5037172 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 30.0 3.01e-01 84.5% 53.8%
5002461 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 30.0 3.35e-01 83.9% 70.8%
5057736 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 29.0 3.11e-01 84.5% 61.5%
4931451 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 28.0 3.20e-01 80.0% 72.7%
D2 high residues 169-267
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.77 30.0 3.17e-01 94.9% 39.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 50.0 5.38e-01 81.8% 76.7%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 33.0 4.61e-01 84.8% 89.4%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 47.0 5.13e-01 78.8% 80.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 4.93e-01 77.8% 78.4%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 52.0 4.63e-01 78.8% 69.9%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 48.0 4.62e-01 78.8% 64.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.68 56.0 5.02e-01 89.9% 70.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 49.0 4.58e-01 78.8% 65.9%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.66 49.0 4.45e-01 81.8% 59.1%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.65 49.0 4.40e-01 81.8% 58.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 40.0 4.65e-01 90.9% 92.4%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.81e-01 81.8% 83.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 37.0 4.51e-01 88.9% 93.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 35.0 4.40e-01 85.9% 100.0%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 4.31e-01 78.8% 62.7%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.63 43.0 4.34e-01 71.7% 99.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 37.0 4.48e-01 85.9% 96.7%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 31.0 3.81e-01 92.9% 78.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 31.0 3.90e-01 97.0% 84.2%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.25e-01 82.8% 76.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 26.0 3.55e-01 91.9% 87.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 30.0 3.56e-01 91.9% 72.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.83e-01 99.0% 81.5%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 43.0 4.16e-01 78.8% 93.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 4.06e-01 84.8% 98.3%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 30.0 3.77e-01 82.8% 100.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.55 39.0 3.98e-01 89.9% 75.5%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 32.0 3.66e-01 98.0% 82.6%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.53 38.0 3.08e-01 73.7% 85.1%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 32.0 3.07e-01 89.9% 48.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.73e-01 92.9% 86.3%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 27.0 3.34e-01 91.9% 84.2%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 4.17e-01 83.8% 98.9%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 33.0 3.23e-01 89.9% 57.5%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 46.0 4.11e-01 100.0% 96.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.06e-01 96.0% 84.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 54.0 5.42e-01 78.8% 71.0%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 52.0 3.35e-01 75.8% 16.8%
1837127 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.74 29.0 3.13e-01 94.9% 40.4%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 50.0 4.72e-01 78.8% 60.9%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.71 63.0 5.23e-01 96.0% 58.6%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 53.0 5.15e-01 78.8% 70.9%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 47.0 4.85e-01 81.8% 71.6%
3227550 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 4.48e-01 78.8% 69.7%
3989261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.69 31.0 4.03e-01 81.8% 74.5%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 33.0 4.30e-01 99.0% 83.6%
140040 4216.1.1.3 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.68 56.0 5.02e-01 89.9% 70.3%
3237942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 45.0 4.03e-01 78.8% 49.6%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 50.0 4.37e-01 78.8% 56.0%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.67 47.0 4.60e-01 78.8% 67.6%
4322675 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.67 45.0 4.33e-01 79.8% 60.9%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 50.0 4.57e-01 78.8% 63.1%
3567195 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 4.23e-01 81.8% 48.6%
4093923 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 31.0 4.01e-01 81.8% 78.2%
3604468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 42.0 4.64e-01 78.8% 80.0%
4034521 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.66 47.0 4.70e-01 78.8% 73.0%
3481479 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.65 51.0 4.38e-01 81.8% 68.0%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.94e-01 84.8% 75.7%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.65 49.0 4.51e-01 81.8% 61.5%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 40.0 4.63e-01 99.0% 90.0%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 29.0 3.90e-01 97.0% 88.9%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.73e-01 92.9% 94.3%
3387014 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.62 29.0 3.85e-01 100.0% 81.8%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.48e-01 88.9% 93.8%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 36.0 3.56e-01 81.8% 53.3%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 39.0 4.51e-01 99.0% 91.4%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 39.0 4.52e-01 99.0% 92.8%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.30e-01 78.8% 65.0%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.31e-01 87.9% 87.1%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 39.0 4.52e-01 99.0% 92.8%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.52e-01 89.9% 90.7%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 36.0 4.24e-01 86.9% 92.3%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 36.0 4.23e-01 96.0% 93.8%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 35.0 3.95e-01 100.0% 81.1%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.58 33.0 3.86e-01 87.9% 88.3%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 31.0 3.79e-01 100.0% 85.0%
3288866 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.84e-01 98.0% 82.5%
4965868 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 35.0 3.98e-01 89.9% 92.1%
3198727 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.57 43.0 4.11e-01 80.8% 70.0%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.57 32.0 3.89e-01 92.9% 96.4%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.56 31.0 3.85e-01 80.8% 96.4%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 38.0 4.28e-01 98.0% 100.0%
5063537 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 33.0 3.97e-01 88.9% 96.7%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.55 38.0 4.06e-01 84.8% 83.5%
5038850 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.55 39.0 4.07e-01 86.9% 82.2%
4968844 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 32.0 3.49e-01 74.7% 68.8%
3964629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 50.0 4.64e-01 100.0% 80.0%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.54 39.0 4.09e-01 92.9% 83.3%
3707783 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 36.0 3.60e-01 83.8% 66.0%
4940501 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 34.0 3.94e-01 90.9% 96.9%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.54 31.0 3.70e-01 92.9% 91.7%
3699699 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.50 37.0 2.84e-01 76.8% 43.1%