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NC_007023.1__YP_239210.1__RB43ORF234w__00234
Bact-VirNC_007023.1__YP_239210.1__RB43ORF234w__00234
Identity
- Accession:
- NC_007023 ↗
- Kingdom:
- phage
Quality
64.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Pseudotevenvirus›
Escherichia_phage_RB43
TaxID: 2887182
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-51
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26097.1 best | Phage_Inh_N | 59.1 | 4.70e-16 | 100.0% | 90.2% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.78 | 57.0 | 5.33e-01 | 78.7% | 98.3% |
| 2cg5B00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.71 | 63.0 | 5.51e-01 | 100.0% | 93.0% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.65 | 54.0 | 4.70e-01 | 100.0% | 89.9% |
| 5ez1A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.63 | 52.0 | 4.17e-01 | 97.9% | 78.0% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 41.0 | 4.31e-01 | 95.7% | 78.0% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.60 | 44.0 | 3.69e-01 | 83.0% | 56.8% |
| 3zqsA02 | 3.10.110.20 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like | 0.59 | 49.0 | 3.98e-01 | 97.9% | 55.1% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.58 | 46.0 | 4.35e-01 | 89.4% | 86.0% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.56 | 47.0 | 3.65e-01 | 100.0% | 95.6% |
| 4ri1C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 46.0 | 3.17e-01 | 97.9% | 53.1% |
| 3uswA02 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 39.0 | 4.05e-01 | 89.4% | 85.7% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 40.0 | 2.70e-01 | 80.9% | 27.8% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.55 | 39.0 | 3.70e-01 | 83.0% | 62.1% |
| 3cx5A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 38.0 | 2.52e-01 | 76.6% | 60.5% |
| 2g47A04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 44.0 | 2.90e-01 | 100.0% | 37.9% |
| 3me5A01 | 1.10.260.140 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.52 | 40.0 | 3.77e-01 | 100.0% | 68.8% |
| 3rjvA02 | 1.25.40.740 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 41.0 | 3.84e-01 | 95.7% | 98.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 143247 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.81 | 60.0 | 5.01e-01 | 80.9% | 51.2% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.77 | 68.0 | 3.96e-01 | 97.9% | 29.7% |
| 3431770 | 148.1.3.180 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › zf-RVT | 0.70 | 48.0 | 3.33e-01 | 72.3% | 86.0% |
| 4566258 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.69 | 60.0 | 4.90e-01 | 100.0% | 80.0% |
| 4633797 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.69 | 59.0 | 4.99e-01 | 97.9% | 78.8% |
| 4230026 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.69 | 59.0 | 4.92e-01 | 100.0% | 83.5% |
| 3392993 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 58.0 | 5.70e-01 | 97.9% | 90.0% |
| 4059355 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.67 | 47.0 | 3.69e-01 | 76.6% | 90.0% |
| 1725514 | 101.42.1.1 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 | 0.67 | 51.0 | 4.64e-01 | 87.2% | 63.2% |
| 4026617 | 148.1.1.8 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa | 0.66 | 40.0 | 3.24e-01 | 74.5% | 31.1% |
| 4029825 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.65 | 54.0 | 4.63e-01 | 100.0% | 94.0% |
| 3255051 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.65 | 55.0 | 4.35e-01 | 100.0% | 76.2% |
| 5044829 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 47.0 | 3.81e-01 | 85.1% | 47.0% |
| 5010630 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.61 | 49.0 | 4.46e-01 | 91.5% | 87.7% |
| 4055950 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.60 | 51.0 | 4.55e-01 | 100.0% | 77.1% |
| 4532715 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.60 | 50.0 | 3.48e-01 | 97.9% | 37.6% |
| 5000807 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.58 | 39.0 | 3.44e-01 | 72.3% | 84.0% |
| 4990074 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.54 | 41.0 | 3.91e-01 | 89.4% | 83.3% |
| 4039771 | 191.1.1.42 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_41 | 0.54 | 43.0 | 3.41e-01 | 100.0% | 96.7% |
D2
high
residues 129-181
D3
high
residues 224-305
Domain cluster:
rep: DQ529280.1__ABF72722.1__PHG25ORF163c__00167__D106-174
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26098.1 best | Phage_Inh_C | 112.7 | 8.50e-33 | 75.6% | 98.4% |