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NC_007046.1__YP_239474.1__SPV66_ORF004__00014
Bact-VirNC_007046.1__YP_239474.1__SPV66_ORF004__00014
Identity
- Accession:
- NC_007046 ↗
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Rountreeviridae›
Rosenblumvirus›
Staphylococcus_phage_66
TaxID: 320832
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 234-285
D2
high
residues 313-483
Domain cluster:
rep: NC_049930.1__YP_009908777.1__H3T63_gp12__00012__D503-665
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05257.23 best | CHAP | 35.9 | 1.20e-08 | 56.1% | 93.8% |
D3
medium
residues 4-35_115-198
Domain cluster:
rep: NC_049930.1__YP_009908777.1__H3T63_gp12__00012__D1-17_116-199
D4
medium
residues 36-114
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 50.0 | 5.45e-01 | 98.7% | 100.0% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.62 | 43.0 | 3.03e-01 | 70.9% | 32.8% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 51.0 | 5.03e-01 | 92.4% | 92.9% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 34.0 | 4.13e-01 | 91.1% | 100.0% |
| 3c9pA00 | 1.10.8.290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › uncharacterized protein sp1917 domain | 0.55 | 42.0 | 3.71e-01 | 84.8% | 90.2% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 44.0 | 3.12e-01 | 91.1% | 69.0% |
| 1ga3A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 40.0 | 3.59e-01 | 93.7% | 54.9% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 48.0 | 3.45e-01 | 100.0% | 57.9% |
| 5ljmA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 3.20e-01 | 89.9% | 80.3% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 41.0 | 3.77e-01 | 86.1% | 65.3% |
| 3ly1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 42.0 | 3.69e-01 | 92.4% | 83.7% |
| 3eheA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.51 | 42.0 | 3.95e-01 | 100.0% | 74.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2990057 | 235.1.1.26 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PlyCA_N | 0.99 | 96.0 | 6.84e-01 | 100.0% | 40.7% |
| 5024287 | 103.5.1.11 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 | 0.61 | 50.0 | 5.17e-01 | 100.0% | 94.7% |
| 2389466 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.57 | 48.0 | 4.75e-01 | 93.7% | 91.8% |
| 5082241 | 2499.1.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like | 0.57 | 49.0 | 3.15e-01 | 94.9% | 44.7% |