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NC_007056.1__YP_240215.1__EWORF072__00066

Bact-Vir

NC_007056.1__YP_240215.1__EWORF072__00066

Identity

Accession:
NC_007056 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_EW

TaxID: 2936814

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: rep: OR354848.1__WNM55073.1__CoNPh25_CDS0068__00067__D11-67
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.66 57.0 5.18e-01 100.0% 79.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 43.0 4.31e-01 70.0% 82.0%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 52.0 3.97e-01 95.0% 46.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.90e-01 81.7% 62.0%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.62 49.0 3.53e-01 88.3% 92.4%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.62 42.0 3.43e-01 71.7% 40.2%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 40.0 2.76e-01 70.0% 49.6%
3oggA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 42.0 3.05e-01 75.0% 60.9%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.15e-01 96.7% 71.3%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 3.33e-01 96.7% 54.2%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 4.01e-01 76.7% 65.7%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 44.0 3.71e-01 85.0% 89.2%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.57 44.0 3.77e-01 85.0% 84.7%
3ogzA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 39.0 2.34e-01 73.3% 55.6%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.01e-01 73.3% 33.3%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 48.0 3.93e-01 100.0% 92.4%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 2.73e-01 85.0% 79.7%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 47.0 3.59e-01 100.0% 70.5%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.55 42.0 3.28e-01 88.3% 82.1%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 41.0 3.56e-01 85.0% 95.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 47.0 4.59e-01 98.3% 97.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.53e-01 76.7% 58.1%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 3.23e-01 86.7% 36.7%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.87e-01 96.7% 76.7%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.35e-01 95.0% 92.3%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 3.26e-01 85.0% 71.9%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.95e-01 90.0% 74.6%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.54 38.0 3.13e-01 73.3% 56.7%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 4.13e-01 86.7% 96.4%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.58e-01 93.3% 71.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 45.0 2.87e-01 100.0% 32.1%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 43.0 3.72e-01 95.0% 59.0%
3akhA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.43e-01 98.3% 100.0%
3o44A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.52e-01 98.3% 96.8%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.52 43.0 3.07e-01 100.0% 80.7%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.91e-01 88.3% 88.9%
2b2tB02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.56e-01 86.7% 65.8%
3mtvA01 2.30.31.30 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Arterivirus nps1beta, nuclease domain 0.51 39.0 3.59e-01 85.0% 91.3%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 2.97e-01 83.3% 89.4%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.51 39.0 3.27e-01 86.7% 71.4%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.68e-01 73.3% 95.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.65 54.0 5.35e-01 95.0% 96.9%
4011453 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.25e-01 96.7% 56.4%
5030272 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 53.0 3.93e-01 100.0% 62.7%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 53.0 5.00e-01 91.7% 81.4%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.62 50.0 4.37e-01 88.3% 95.6%
3608772 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.62 54.0 3.25e-01 100.0% 19.1%
4973193 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.61 43.0 3.90e-01 75.0% 55.3%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 5.09e-01 95.0% 100.0%
3621362 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.59 47.0 2.89e-01 91.7% 30.0%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.99e-01 96.7% 93.3%
3390648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.00e-01 96.7% 64.2%
4024997 4984.1.1.0 ↗ alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.58 48.0 2.99e-01 98.3% 29.6%
4165306 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.58 41.0 3.42e-01 75.0% 41.9%
4946587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.49e-01 83.3% 39.2%
3991514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.77e-01 96.7% 59.3%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 46.0 4.54e-01 98.3% 92.3%
5026901 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.22e-01 83.3% 85.0%
3469035 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 41.0 4.11e-01 86.7% 80.0%
5024985 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.56 35.0 3.41e-01 80.0% 55.7%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 4.29e-01 81.7% 100.0%
3301217 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 3.76e-01 76.7% 67.1%
3619283 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 48.0 2.97e-01 100.0% 76.5%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.54 39.0 3.88e-01 80.0% 75.4%
3783021 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 41.0 3.42e-01 86.7% 70.0%
2824258 109.21.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.54 37.0 2.31e-01 71.7% 28.3%
3217533 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.54 41.0 2.78e-01 90.0% 57.6%
4489098 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.53 38.0 2.36e-01 75.0% 19.0%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 42.0 3.78e-01 96.7% 73.7%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 45.0 3.23e-01 100.0% 71.0%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.74e-01 100.0% 62.6%
3937194 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.53 41.0 4.04e-01 90.0% 80.0%
3395736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 40.0 4.03e-01 91.7% 90.0%
3196317 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 40.0 3.01e-01 88.3% 36.9%
3257276 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 43.0 3.45e-01 98.3% 52.8%
4024605 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 2.87e-01 95.0% 56.6%
3399675 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 37.0 3.70e-01 88.3% 76.9%
4609873 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.50 37.0 2.99e-01 81.7% 39.2%