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NC_007057.1__YP_240247.1__ST96ORF043__00018

Bact-Vir

NC_007057.1__YP_240247.1__ST96ORF043__00018

Identity

Accession:
NC_007057 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_96

TaxID: 2936815

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-113
PDB
Domain cluster: rep: MH707434.1__AYJ75622.1__BSP19_060__00060__D144-264
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divS02 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.75 60.0 6.22e-01 100.0% 91.3%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 5.42e-01 100.0% 90.4%
1zx5A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 39.0 4.41e-01 100.0% 77.1%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 60.0 4.73e-01 100.0% 96.1%
3clwC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 35.0 3.68e-01 100.0% 56.0%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 5.45e-01 99.1% 97.8%
4p02B03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 59.0 5.40e-01 100.0% 90.2%
2omkA00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.64 40.0 3.21e-01 100.0% 31.5%
5v00B01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 36.0 4.09e-01 100.0% 75.6%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 38.0 3.82e-01 100.0% 57.6%
7ccbA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 54.0 4.99e-01 97.3% 89.7%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 5.08e-01 96.4% 98.5%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 38.0 4.14e-01 100.0% 75.3%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 57.0 5.29e-01 100.0% 92.0%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 55.0 5.00e-01 100.0% 96.6%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 38.0 4.17e-01 100.0% 79.5%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 41.0 4.17e-01 100.0% 69.9%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 37.0 3.84e-01 100.0% 63.9%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 46.0 4.88e-01 100.0% 93.9%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.46e-01 100.0% 97.0%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 47.0 5.03e-01 100.0% 98.0%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 34.0 3.71e-01 100.0% 67.7%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 36.0 3.74e-01 100.0% 67.3%
2c9kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 52.0 4.59e-01 100.0% 83.5%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.74e-01 100.0% 61.3%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 51.0 4.48e-01 100.0% 95.8%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 35.0 3.38e-01 100.0% 54.0%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 45.0 4.58e-01 100.0% 89.2%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 45.0 4.48e-01 100.0% 86.4%
2wnoA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 46.0 4.59e-01 100.0% 91.2%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 44.0 4.45e-01 100.0% 88.4%
3qs2A00 2.60.40.3290 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA 0.53 44.0 3.81e-01 89.3% 96.0%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.53 43.0 4.44e-01 100.0% 94.3%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.61e-01 100.0% 94.0%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 4.31e-01 100.0% 87.0%
1nziA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.52 44.0 4.46e-01 100.0% 92.1%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 32.0 3.06e-01 100.0% 50.0%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 47.0 4.19e-01 100.0% 88.5%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.44e-01 100.0% 93.9%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.09e-01 100.0% 83.9%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.94e-01 87.5% 97.7%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.51 32.0 2.98e-01 100.0% 45.8%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 37.0 3.88e-01 100.0% 87.8%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 39.0 3.94e-01 95.5% 82.5%
2gauA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 33.0 3.15e-01 100.0% 54.0%
3e97A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 34.0 3.15e-01 100.0% 52.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031473 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.98 90.0 7.94e-01 100.0% 70.7%
4031328 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.88 81.0 7.37e-01 100.0% 75.0%
3587261 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.82 72.0 7.22e-01 100.0% 90.4%
4888733 10.29.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C 0.80 64.0 6.78e-01 92.0% 94.9%
4957580 10.29.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins 0.79 73.0 6.87e-01 98.2% 97.7%
3865581 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 63.0 5.00e-01 100.0% 79.5%
3597078 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.66 60.0 4.97e-01 99.1% 77.4%
5025982 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 38.0 4.34e-01 99.1% 77.5%
3589425 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 60.0 4.89e-01 100.0% 97.6%
3631904 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 36.0 3.86e-01 100.0% 61.1%
3944685 10.12.1.71 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C_2 0.66 41.0 3.23e-01 100.0% 30.0%
1280305 10.12.1.59 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 0.65 41.0 4.35e-01 100.0% 72.2%
4019267 10.1.1.36 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase 0.65 59.0 4.59e-01 100.0% 91.7%
1030922 10.12.1.59 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 0.64 39.0 4.17e-01 100.0% 70.2%
3342496 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.64 53.0 3.40e-01 100.0% 18.7%
3219722 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 56.0 4.51e-01 100.0% 83.9%
5022185 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 49.0 5.15e-01 100.0% 92.2%
4990612 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 39.0 3.94e-01 100.0% 63.6%
3546349 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 35.0 3.74e-01 100.0% 62.0%
3598935 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 45.0 4.75e-01 100.0% 87.0%
3588172 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 37.0 3.42e-01 100.0% 44.7%
4882977 10.1.1.29 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Exotox-A_bind 0.61 54.0 4.13e-01 100.0% 63.9%
3421268 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.61 45.0 4.80e-01 96.4% 91.6%
4992070 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.61 40.0 4.27e-01 100.0% 77.9%
1279880 10.12.1.22 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.61 41.0 3.97e-01 100.0% 61.6%
3599890 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 55.0 5.03e-01 100.0% 92.4%
3936800 10.1.1.92 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26430 0.60 54.0 4.22e-01 100.0% 61.6%
3822933 207.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.60 55.0 3.50e-01 100.0% 22.5%
5040751 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 51.0 5.23e-01 100.0% 95.5%
3759214 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.58 53.0 4.48e-01 100.0% 91.4%
3691709 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 52.0 4.47e-01 100.0% 85.9%
3252390 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 52.0 4.86e-01 100.0% 92.1%
4220410 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 46.0 4.86e-01 100.0% 96.0%
4944601 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 52.0 5.14e-01 100.0% 94.2%
3233124 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 45.0 4.43e-01 100.0% 78.3%
3588187 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 52.0 4.76e-01 100.0% 98.0%
2553957 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.57 43.0 4.61e-01 100.0% 94.8%
3882535 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 47.0 4.67e-01 100.0% 87.8%
5027268 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 51.0 4.56e-01 100.0% 91.0%
3663249 10.9.1.1 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › PPO1_KFDV 0.56 50.0 4.53e-01 100.0% 81.0%
4962000 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 33.0 3.74e-01 97.3% 81.2%
5030861 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 41.0 4.16e-01 94.6% 82.4%
3988168 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.54 34.0 3.02e-01 100.0% 41.8%
3222026 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.53 41.0 4.11e-01 100.0% 82.6%
5027725 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.01e-01 97.3% 34.7%
3591018 11.1.5.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GramPos_pilinBB 0.52 46.0 4.10e-01 100.0% 88.2%
5018138 10.1.2.186 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.52 47.0 4.59e-01 100.0% 92.0%
3231706 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 42.0 4.13e-01 88.4% 93.6%
3234100 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 42.0 4.23e-01 100.0% 90.0%
1145546 10.34.1.1 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.52 36.0 4.08e-01 98.2% 96.5%
3220055 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.51 42.0 4.01e-01 89.3% 90.8%
3895708 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.51 45.0 4.29e-01 100.0% 91.1%