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YP_271870.1
Arc-VirNC_007217__YP_271870.1__HPSH1-gp13__00013
Identity
- Accession:
- NC_007217 ↗
- Protein ID:
- YP_271870.1 ↗
- Kingdom:
- archaea
Quality
38.2
mean pLDDT
Taxonomy
Helvetiavirae›
Dividoviricota›
Laserviricetes›
Halopanivirales›
Sphaerolipoviridae›
Alphasphaerolipovirus›
Haloarcula_hispanica_SH1_virus
TaxID: 326574
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 914-963
D2
high
residues 1089-1144
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.64 | 53.0 | 5.12e-01 | 100.0% | 86.4% |
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.55 | 45.0 | 3.59e-01 | 87.5% | 51.9% |
| 5v07Z02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 43.0 | 3.96e-01 | 100.0% | 79.5% |
| 2rjiA00 | 1.10.1740.170 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI | 0.51 | 39.0 | 3.52e-01 | 89.3% | 70.2% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.64e-01 | 100.0% | 77.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610762 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 61.0 | 5.79e-01 | 100.0% | 80.0% |
| 3785675 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 61.0 | 5.72e-01 | 100.0% | 82.9% |
| 3518117 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.56 | 44.0 | 3.05e-01 | 92.9% | 90.4% |
| 3452647 | 174.1.1.57 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › ABCC10_N | 0.53 | 43.0 | 3.12e-01 | 100.0% | 67.4% |
| 3578072 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.53 | 37.0 | 3.15e-01 | 76.8% | 96.0% |
D3
high
residues 1266-1361
D4
medium
residues 25-162
D5
medium
residues 185-322_374-388
D6
medium
residues 341-373_389-409_424-446
D7
medium
residues 560-657