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YP_271896.1

Arc-Vir

NC_007217__YP_271896.1__HPSH1-gp39__00039

Identity

Accession:
NC_007217 ↗
Protein ID:
YP_271896.1 ↗
Kingdom:
archaea

Quality

76.3 mean pLDDT

Taxonomy

Helvetiavirae› Dividoviricota› Laserviricetes› Halopanivirales› Sphaerolipoviridae› Alphasphaerolipovirus› Haloarcula_hispanica_SH1_virus

TaxID: 326574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-88
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 42.0 4.21e-01 93.2% 62.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 46.0 4.00e-01 86.3% 48.7%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.63 48.0 4.29e-01 97.3% 57.3%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 3.79e-01 71.2% 87.7%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.62 33.0 3.38e-01 93.2% 52.1%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 55.0 4.60e-01 100.0% 67.7%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 45.0 3.76e-01 83.6% 70.0%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.59 40.0 3.70e-01 72.6% 53.1%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 43.0 3.87e-01 98.6% 56.4%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.62e-01 79.5% 96.8%
3r4rA02 2.60.40.2590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.11e-01 93.2% 96.0%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 41.0 3.70e-01 76.7% 92.7%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 51.0 3.65e-01 100.0% 34.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 36.0 3.66e-01 95.9% 62.7%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 39.0 2.98e-01 72.6% 29.3%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 49.0 3.38e-01 100.0% 84.7%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 43.0 3.06e-01 84.9% 74.7%
3ga7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 2.81e-01 82.2% 42.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.69e-01 86.3% 96.9%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 3.03e-01 71.2% 63.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.45e-01 93.2% 73.2%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.43e-01 83.6% 93.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.39e-01 97.3% 61.3%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.00e-01 98.6% 23.2%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.13e-01 95.9% 32.2%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.79e-01 97.3% 40.8%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 41.0 2.83e-01 95.9% 62.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.28e-01 94.5% 67.7%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 44.0 4.32e-01 100.0% 87.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 46.0 5.26e-01 95.9% 78.2%
4988502 375.1.1.298 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.73 42.0 5.01e-01 95.9% 91.1%
5065441 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 44.0 5.03e-01 95.9% 84.9%
3798357 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 41.0 4.10e-01 95.9% 56.0%
4972785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 45.0 5.27e-01 98.6% 98.0%
4026416 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.70 41.0 4.06e-01 95.9% 56.0%
4962895 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 49.0 5.55e-01 74.0% 98.2%
3303020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.72e-01 93.2% 86.0%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.65 41.0 4.38e-01 93.2% 73.8%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 38.0 4.34e-01 93.2% 80.0%
3701496 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 37.0 4.47e-01 93.2% 91.1%
143267 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.64 57.0 4.76e-01 100.0% 65.4%
4962087 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 40.0 4.41e-01 93.2% 80.0%
3496489 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.61 36.0 4.33e-01 93.2% 95.6%
4946882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 35.0 3.97e-01 93.2% 80.0%
3271259 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 51.0 4.92e-01 100.0% 97.6%
4474202 809.1.1.7 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.58 35.0 3.44e-01 97.3% 56.4%
3683776 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.58 40.0 2.71e-01 72.6% 47.1%
416386 11.1.4.46 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Fim1F_C 0.57 49.0 4.08e-01 94.5% 94.5%
3462961 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.57 49.0 3.43e-01 100.0% 42.0%
3516127 11.1.1.882 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_C 0.55 42.0 3.54e-01 82.2% 77.6%
4873587 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 45.0 3.69e-01 98.6% 94.8%
4953685 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.54 39.0 3.64e-01 75.3% 96.7%
3589900 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 41.0 3.90e-01 82.2% 72.9%
3519579 295.1.1.20 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.54 37.0 3.65e-01 94.5% 66.3%
3374952 375.4.1.5 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.54 44.0 4.28e-01 95.9% 97.6%
3832799 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 38.0 2.66e-01 82.2% 20.4%
3589620 4312.1.1.11 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.52 37.0 3.53e-01 78.1% 92.2%
3248039 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 44.0 3.97e-01 95.9% 83.0%
3782734 59.1.1.11 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.51 42.0 3.16e-01 97.3% 76.4%
3418892 5.1.8.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 0.50 38.0 3.34e-01 100.0% 53.0%