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YP_271907.1
Arc-VirNC_007217__YP_271907.1__HPSH1-gp50__00050
Identity
- Accession:
- NC_007217 ↗
- Protein ID:
- YP_271907.1 ↗
- Kingdom:
- archaea
Quality
78.0
mean pLDDT
Taxonomy
Helvetiavirae›
Dividoviricota›
Laserviricetes›
Halopanivirales›
Sphaerolipoviridae›
Alphasphaerolipovirus›
Haloarcula_hispanica_SH1_virus
TaxID: 326574
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 85-219
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25941.1 best | PDDEXK_16 | 93.6 | 1.50e-26 | 97.8% | 89.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 41.0 | 4.74e-01 | 74.8% | 83.3% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 42.0 | 4.93e-01 | 77.0% | 94.5% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 39.0 | 3.79e-01 | 74.8% | 56.6% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 41.0 | 4.65e-01 | 79.3% | 93.0% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.55 | 44.0 | 3.88e-01 | 83.7% | 60.8% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.52 | 41.0 | 3.56e-01 | 86.7% | 96.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005296 | 2008.1.1.232 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25941 | 0.88 | 72.0 | 7.61e-01 | 97.0% | 94.2% |
| 4936054 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.72 | 58.0 | 6.15e-01 | 100.0% | 95.8% |
| 3005282 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.70 | 51.0 | 5.27e-01 | 74.8% | 90.4% |
| 3884920 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.69 | 50.0 | 4.74e-01 | 74.8% | 71.2% |
| 1171244 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.68 | 41.0 | 4.74e-01 | 74.8% | 83.3% |
| 4037784 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.65 | 48.0 | 4.90e-01 | 76.3% | 96.2% |
| 5037496 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 61.0 | 5.96e-01 | 100.0% | 93.1% |
| 3575974 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.65 | 47.0 | 5.03e-01 | 74.8% | 91.3% |
| 3837944 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 48.0 | 5.14e-01 | 87.4% | 92.2% |
| 3280651 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 59.0 | 4.84e-01 | 100.0% | 67.0% |
| 4045707 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 58.0 | 5.06e-01 | 100.0% | 74.4% |
| 3230331 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.59 | 50.0 | 3.69e-01 | 88.9% | 46.6% |
| 5026362 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 52.0 | 4.87e-01 | 100.0% | 95.2% |
| 5032932 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 48.0 | 4.76e-01 | 100.0% | 88.3% |
| 4241480 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.54 | 40.0 | 3.47e-01 | 100.0% | 48.6% |
| 5069610 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.54 | 32.0 | 3.15e-01 | 74.8% | 53.3% |
| 4960646 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.51 | 40.0 | 4.30e-01 | 89.6% | 99.1% |